Mercurial > repos > iuc > tracy_decompose

diff tracy_decompose.xml @ 1:c57264841d60 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tracy commit 8eb3532d394f6a44d1edbcbe5ef05fd0474cdab3
author iuc
date Thu, 20 Mar 2025 07:17:17 +0000
parents 6d4fa8880e60
children
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--- a/tracy_decompose.xml	Tue Oct 12 14:18:15 2021 +0000
+++ b/tracy_decompose.xml	Thu Mar 20 07:17:17 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="tracy_decompose" name="tracy Decompose" version="@TOOL_VERSION@+galaxy0" profile="20.09">
+<tool id="tracy_decompose" name="tracy Decompose" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
     <description>heterozygous mutations (and call variants)</description>
     <macros>
         <import>macros.xml</import>
@@ -53,30 +53,30 @@
         </data>
     </outputs>
     <tests>
-        <test expect_num_outputs="3">
+        <test expect_num_outputs="3"> <!-- test 1 -->
             <param name="genome" value="reference1.fasta" ftype="fasta" />
-            <param name="tracefile" value="input1.ab1" ftype="ab1" />
+            <param name="tracefile" value="input1_r.ab1" ftype="ab1" />
             <output name="out_fasta1" value="out1.align1.fasta" ftype="fasta" />    
             <output name="out_fasta2" value="out1.align2.fasta" ftype="fasta" />    
             <output name="out_fasta3" value="out1.align3.fasta" ftype="fasta" />    
         </test>
-        <test expect_num_outputs="4">
+        <test expect_num_outputs="4"> <!-- test 2 -->
             <param name="genome" value="reference1.fasta" ftype="fasta" />
-            <param name="tracefile" value="input1.ab1" ftype="ab1" />
+            <param name="tracefile" value="input1_r.ab1" ftype="ab1" />
             <param name="callVariants" value="true" />
             <output name="out_fasta1" value="out1.align1.fasta" ftype="fasta" />    
             <output name="out_fasta2" value="out1.align2.fasta" ftype="fasta" />    
             <output name="out_fasta3" value="out1.align3.fasta" ftype="fasta" />    
             <output name="out_bcf" compare="sim_size" value="out1.bcf" ftype="bcf" />
         </test>
-        <test expect_num_outputs="5">
+        <test expect_num_outputs="5"> <!-- test 3 -->
             <param name="genome" value="reference1.fasta" ftype="fasta" />
-            <param name="tracefile" value="input1.ab1" ftype="ab1" />
+            <param name="tracefile" value="input1_r.ab1" ftype="ab1" />
             <param name="callVariants" value="true" />
             <param name="optional_outputs" value="json" />
             <output name="out_json" ftype="json">
                 <assert_contents>
-                    <has_text text='"peakA": [5, 5, 5, 5, 5, 4' />
+                    <has_text text='"peakA": [20, 20, 20, 19, 19' />
                 </assert_contents>
             </output>
             <output name="out_fasta1" value="out1.align1.fasta" ftype="fasta" />    
@@ -84,14 +84,14 @@
             <output name="out_fasta3" value="out1.align3.fasta" ftype="fasta" />    
             <output name="out_bcf" compare="sim_size" value="out1.bcf" ftype="bcf" />
         </test>
-        <test expect_num_outputs="5">
+        <test expect_num_outputs="5"> <!-- test 4 -->
             <param name="genome" value="reference1.fasta" ftype="fasta" />
-            <param name="tracefile" value="input1.ab1" ftype="ab1" />
+            <param name="tracefile" value="input1_r.ab1" ftype="ab1" />
             <param name="callVariants" value="true" />
             <param name="optional_outputs" value="tabular" />
             <output name="out_stats" ftype="tabular">
                 <assert_contents>
-                    <has_text_matching expression="13\s1\s2\s2\s11\s2\sT\sG\sN\s5\sY" />
+                    <has_text_matching expression="8\s20\s4\s14\s37\s1\sT\sR\sN\s0\sY" />
                 </assert_contents>
             </output>
             <output name="out_fasta1" value="out1.align1.fasta" ftype="fasta" />