Mercurial > repos > iuc > tracy_basecall

comparison tracy_basecall.xml @ 1:5c4c8c4104b2 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tracy commit 8eb3532d394f6a44d1edbcbe5ef05fd0474cdab3
author iuc
date Thu, 20 Mar 2025 07:17:30 +0000
parents d24b41831175
children
comparison
equal deleted inserted replaced
0:d24b41831175 1:5c4c8c4104b2
1 <tool id="tracy_basecall" name="tracy Basecall" version="@TOOL_VERSION@+galaxy0" profile="20.09"> 1 <tool id="tracy_basecall" name="tracy Basecall" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
2 <description>from Sanger chromatogram tracefile</description> 2 <description>from Sanger chromatogram tracefile</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
27 <when input="format" value="json" format="json" /> 27 <when input="format" value="json" format="json" />
28 </change_format> 28 </change_format>
29 </data> 29 </data>
30 </outputs> 30 </outputs>
31 <tests> 31 <tests>
32 <test> 32 <test expect_num_outputs="1"> <!-- test 1 -->
33 <param name="tracefile" value="input1.ab1" ftype="ab1" /> 33 <param name="tracefile" value="input1_r.ab1" ftype="ab1" />
34 <output name="output" file="output1.fasta" ftype="fasta" /> 34 <output name="output" file="output1.fasta" ftype="fasta" />
35 </test> 35 </test>
36 <test> 36 <test expect_num_outputs="1"> <!-- test 2 -->
37 <param name="tracefile" value="input1.ab1" ftype="ab1" /> 37 <param name="tracefile" value="input1_r.ab1" ftype="ab1" />
38 <param name="format" value="json" /> 38 <param name="format" value="json" />
39 <output name="output" file="output1.json" ftype="json" /> 39 <output name="output" file="output1.json" ftype="json" />
40 </test> 40 </test>
41 <test> 41 <test expect_num_outputs="1"> <!-- test 3 -->
42 <param name="tracefile" value="input1.ab1" ftype="ab1" /> 42 <param name="tracefile" value="input1_r.ab1" ftype="ab1" />
43 <param name="pratio" value="0.2" /> 43 <param name="pratio" value="0.2" />
44 <output name="output" file="output2.fasta" ftype="fasta" /> 44 <output name="output" file="output2.fasta" ftype="fasta" />
45 </test> 45 </test>
46 <test> 46 <test expect_num_outputs="1"> <!-- test 4 -->
47 <param name="tracefile" value="input2.scf" ftype="scf" /> 47 <param name="tracefile" value="input2.scf" ftype="scf" />
48 <param name="format" value="fasta" /> 48 <param name="format" value="fasta" />
49 <output name="output" file="output3.fasta" ftype="fasta" /> 49 <output name="output" file="output3.fasta" ftype="fasta" />
50 </test> 50 </test>
51 </tests> 51 </tests>