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comparison test-data/out1.align3.fasta @ 1:31599dc6380f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tracy commit 8eb3532d394f6a44d1edbcbe5ef05fd0474cdab3
author iuc
date Thu, 20 Mar 2025 07:17:06 +0000
parents 726b73198fdc
children
comparison
equal deleted inserted replaced
0:726b73198fdc 1:31599dc6380f
1 >Alt1 (Estimated allelic Fraction: 0.52) 1 >Alt1 (Estimated allelic Fraction: 0.63)
2 TCNGCNGGNGTNNTCCGTATTTTNNTTGGATCCNCATTCATAGCAAACACCANAAATCCATATTGGGACCACAA 2 ACAGGCATTAATTTACGTGTTTCCTCAGCATGTGCAAGCATTTCTCGCAAATTCCAAGAAACAGTTCCAAGAAT
3 TCCCAACAAAGACCACTGGACAGAAGCCAACAAGGTAGGAGTGGGAGCATTCGGGCCTGGGTTCACTCCCCCAC 3 TTCTTCTTTCTCATTAGAGACAATGGATGGTAGTATGTAAAAAGCGCTCTTGCACTTTTTAAGCACTGTCTTTG
4 ACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCC 4 CCTCTTCTAATGTATAACCATTATTACCCTGTCCAGGGTAGGTGGTTATATAATTGTCTACTGGTAACTTCTTT
5 TCCACCAATCGACAGTCAGGAAGGCAGCCTACCCCAATCACTCCACCTTTGAGAGACACTCATCCTCAGGCCAT 5 AATGCTTTTGTAAGCATTTCGGTAGTACCACCAGCTTTTTTAGTAGGTATAACTACAGCAGTTAAAACACCTTC
6 GCAGTGGAATTCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAATCCTGCTGGTGGCTCCAGTTCCG 6 CTTAATGACATCACCTACTATGTAAGGAGCATCTTTCTTTAGAAAGGTGGTGTCAGTGTCTTTAACAAGCATGG
7 GAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCTTCTCGAGGATTGGGGACCCTGCACCG 7 CAGAATCTGGATGAAGGTTGCCATTAATGTCTATATAAAGTAACAAATTCTCTGTGAGAAACTTAGTTTCTTCC
8 AACATGGAAAGCATCACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAA 8 AAAGTGGTTGTAACTTCTTCAACACAAGCCTTGACTTTCTTTTCTTCAGCCTGTTGCTTTTGTTCAACTGAAGG
9 AATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTC 9 TTTATTTTCAGTTGTTGGTGGCTCAACTTCCATTTTAGGAACTTCAGCAATCTGTTGTTCTACTTGTGCCTCAC
10 TTGGCCAAAATTCGCAGTCCCAAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGCCTATCGC 10 TCTTCATTTCTAAAAAGCTAGAAACAAGTTTTTCATAGAGATCTTTGTCAAAGACAGTCAAGTAAACATTTGTG
11 TGGATGTGTCTGCGGCGGTTTATCATCTTCCTCTTCATCGTGCTGCTATGCCTCATCATCCTGTTGGGTTCGTC 11 CGAACAGTGTCTACACAAACTCTTAAGGATTGGACAGGGTCAGCACCAAAGATGCCTGCTGACAATAAAGGTGC
12 TGCACTATCAAAGGTATGTTGCCCCGGTTTGTCNTTNNTAATTCCAAGGATCATGAAAGCCACCCACTACGGGA 12 TAGTAAAGTATCATACTGATTGAAATTTTCATATGCAGTTTTAAGAAGTTGAATGCTTTCACCCTTGTTGATAT
13 ACCNTTGCCGCAAGCTGCACGACTCATTTCTCAAAGGAAANTCNANGNTTTTCCCTCATNGTTGCTGTTCAAAA 13 TAGGACCAACAACATGAAGACAATTTTTAGCAAGATTATGTCCACTCAGAACACAACTACCACCAACATTCAGA
14 GCTTCGGACGGAAAATGCACATTGTAGTTNCNNATCCCATCATCATGGGNTTTGGGAAATNCCATATGGTANNG 14 GGTCCGTTTGTGGCTATGTAATTGTCTGATTCTACTTGCATAGCGTTGTTTGTAGCTTTGTTTAAAGCTCCAGC
15 GGCNNNAGCCCGCNTNNCCT 15 AACACCTCCTCCATGTTTAAGTAAACATTAGCTGCATTAACAACTACTGTTGTTTCCCCTGTT
16 >Alt2 (Estimated allelic Fraction: 0.28) 16 >Alt2 (Estimated allelic Fraction: 0.34)
17 TANTTNTTNGGNNGTCACTCGCCNNGGGGATCANAGTTATGTGGGGACATTANTCATTTTGTTTGGGATTTCCC 17 ACAGGCATTAATTTACGTGTTTCCTCAGCATGTGCAAGCATTTCTCGCAAATTCCAAGAAACAGTTCCAAGAAT
18 TCTCTTCTTAGAACACTGGACATAAGCCAACAAGGTAGGAGTGGGAGCATTCGGGCCTGGGTTCACTCCCCCAC 18 TTCTTCTTTCTCATTAGAGACAATGGATGGTAGTATGTAAAAAGCGCTCTTGCACTTTTTAAGCACTGTCTTTG
19 ACGGAGGCCTTTTGGGGTGGAGCACTCAGGCTCAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCC 19 CCTCTTCTAATGTATAACCATTATTACCCTGTCCAGGGTAGGTGGTTATATAATTGTCTACTGGTAACTTCTTT
20 TCCACCAATCGACAGTCAGGAAGGCAGCCTACCCAAATTACACCACCTTTGAGAGACACTCATCCTCAGGCCAT 20 AATGCTTTTGTAAGCATTTCGGTAGTACCACCAGCTTTTTTAGTAGGTATAACTACAGCAGTTAAAACACCTTC
21 GCAGTGGAATTCCACAACATGCCACCAACCTCTGCAGGATCCCAAAGTAAGTCCTGCTGGTGGCTCCAGTTCCG 21 CTTAATGACATCACCTACTATGTAAGGAGCATCTTTCTTTAGAAAGGTGGTGTCAGTGTCTTTAACAAGCATGG
22 GAACAGTGAACCCTGTTCCGACTACAGCCTCACTCATCTCGTCAACCTTCTCGAGGATTGGGGACCCTGCACCG 22 CAGAATCTGGATGAAGGTTGCCATTAATGTCTATATAAAGTAACAAATTCTCTGTGAGAAACTTAGTTTCTTCC
23 AACATGGACAGCATCACATCAGGATTCCGATGACCCCCGCTCATGTTACAAGCGGGGTTTTTCTTGTTGACAAA 23 AAAGTGGTTGTAACTTCTTCAACACAAGCCTTGACTTTCTTTTCTTCAGCCTGTTGCTTTTGTTCAACTGAAGG
24 AATAAACAGGATACCGCGTAGACAACAGGCGTGGTGGACTTCTCTCTCTTTTGGAAGGGGAGGACCTTTGTGTG 24 TTTATTTTCAGTTGTTGGTGGCTCAACTTCCATTTTAGGAACTTCAGCAATCTGTTGTTCTACTTGTGCCTCAC
25 ATGGTGGGAAATCTTAGTCCCTCGCCTCCAATCACTCTCCACCCTCTTGTGGGCCTAATTGAGGTGAGTCCCGC 25 TCTTCATTTCTAAAAAGCTAGAAACAAGTTTTTCATAGAGATCTTTGTCAAAGACAGTCAAGTAAACATTTGTG
26 TGAAAGAAGTGGCAGCGGGGTATCACATACCTCTTCATCTTGCGGGAGAGCCGCCACGTCCTGTGTGGGTGAGC 26 CGAACAGTGTCTACACAAACTCTTAAGGATTGGACAGGGTCAGCACCAAAGATGCCTGCTGACAATAAAGGTGC
27 TCCCCCAGAACAAAAGGGTGTTGCGGGGGGGGGNGGNNACAAACCGCGGGGGGAAGGAGGGAACCCACTAAAAG 27 TAGTAAAGTATCATACTGATTGAAATTTTCATATGCAGTTTTAAGAAGTTGAATGCTTTCACCCTTGTTGATAT
28 AACNGGTGCGGTTTCAAAAAAGGGACTGTTTAGTTGAGAANGGNCNGNCATTTTTCATANTTTCTGTGGGTGAG 28 TAGGACCAACAACATGAAGACAATTTTTAGCAAGATTATGTCCACTCAGAACACAACTACCACCAACATTCAGA
29 TAAAAAACACGGGGGACGCAGATGGGAGGNTNNTCCAAACACCAAAAAANGAGGGAGGGGNAATTTATTCTNNA 29 GGTCCGTTTGTGGCTATGTAAATGTCTGAATCTACTTGCATAGCGTTGTTTGTAGCTTTGTTTAAAGCTCCAGC
30 AGGNNNGCGCAAGNCNNTTC 30 CACACCTTCTTCATGTTTAAGTAAACATTAGCTGCATTTACAACTACTGTGGTTTCACCTGTT
31 31
32 Alignment score: 730 32 Alignment score: 3011
33 #------------------------------------------------------------------------- 33 #-------------------------------------------------------------------------
34 34
35 Alt1 1 TCNGCNGGNGTNNTCCGTATTTTNNTTGGATCCNCATTCATAGCAAACACCANAAATCCA 35 Alt1 1 ACAGGCATTAATTTACGTGTTTCCTCAGCATGTGCAAGCATTTCTCGCAAATTCCAAGAA
36 | | | || || | || ||||| | || | ||| || || 36 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
37 Alt2 1 TANTTNTTNGGNNGTCACTCGCCNNGGGGATCANAGTTATGTGGGGACATTANTCATTTT 37 Alt2 1 ACAGGCATTAATTTACGTGTTTCCTCAGCATGTGCAAGCATTTCTCGCAAATTCCAAGAA
38 38
39 Alt1 61 TATTGGGACCACAATCCCAACAAAGACCACTGGACAGAAGCCAACAAGGTAGGAGTGGGA 39 Alt1 61 ACAGTTCCAAGAATTTCTTCTTTCTCATTAGAGACAATGGATGGTAGTATGTAAAAAGCG
40 |||||| | || | | ||| ||||||||| ||||||||||||||||||||||| 40 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
41 Alt2 61 GTTTGGGATTTCCCTCTCTTCTTAGAACACTGGACATAAGCCAACAAGGTAGGAGTGGGA 41 Alt2 61 ACAGTTCCAAGAATTTCTTCTTTCTCATTAGAGACAATGGATGGTAGTATGTAAAAAGCG
42 42
43 Alt1 121 GCATTCGGGCCTGGGTTCACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCT 43 Alt1 121 CTCTTGCACTTTTTAAGCACTGTCTTTGCCTCTTCTAATGTATAACCATTATTACCCTGT
44 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 44 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
45 Alt2 121 GCATTCGGGCCTGGGTTCACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCACTCAGGCT 45 Alt2 121 CTCTTGCACTTTTTAAGCACTGTCTTTGCCTCTTCTAATGTATAACCATTATTACCCTGT
46 46
47 Alt1 181 CAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACAGTCA 47 Alt1 181 CCAGGGTAGGTGGTTATATAATTGTCTACTGGTAACTTCTTTAATGCTTTTGTAAGCATT
48 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 48 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
49 Alt2 181 CAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACAGTCA 49 Alt2 181 CCAGGGTAGGTGGTTATATAATTGTCTACTGGTAACTTCTTTAATGCTTTTGTAAGCATT
50 50
51 Alt1 241 GGAAGGCAGCCTACCCCAATCACTCCACCTTTGAGAGACACTCATCCTCAGGCCATGCAG 51 Alt1 241 TCGGTAGTACCACCAGCTTTTTTAGTAGGTATAACTACAGCAGTTAAAACACCTTCCTTA
52 |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| 52 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
53 Alt2 241 GGAAGGCAGCCTACCCAAATTACACCACCTTTGAGAGACACTCATCCTCAGGCCATGCAG 53 Alt2 241 TCGGTAGTACCACCAGCTTTTTTAGTAGGTATAACTACAGCAGTTAAAACACCTTCCTTA
54 54
55 Alt1 301 TGGAATTCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAATCCTGCTGGTGGC 55 Alt1 301 ATGACATCACCTACTATGTAAGGAGCATCTTTCTTTAGAAAGGTGGTGTCAGTGTCTTTA
56 |||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||| 56 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
57 Alt2 301 TGGAATTCCACAACATGCCACCAACCTCTGCAGGATCCCAAAGTAAGTCCTGCTGGTGGC 57 Alt2 301 ATGACATCACCTACTATGTAAGGAGCATCTTTCTTTAGAAAGGTGGTGTCAGTGTCTTTA
58 58
59 Alt1 361 TCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCTTC 59 Alt1 361 ACAAGCATGGCAGAATCTGGATGAAGGTTGCCATTAATGTCTATATAAAGTAACAAATTC
60 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
61 Alt2 361 TCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACAGCCTCACTCATCTCGTCAACCTTC 61 Alt2 361 ACAAGCATGGCAGAATCTGGATGAAGGTTGCCATTAATGTCTATATAAAGTAACAAATTC
62 62
63 Alt1 421 TCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGATTCCTAGGACCC 63 Alt1 421 TCTGTGAGAAACTTAGTTTCTTCCAAAGTGGTTGTAACTTCTTCAACACAAGCCTTGACT
64 |||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| 64 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
65 Alt2 421 TCGAGGATTGGGGACCCTGCACCGAACATGGACAGCATCACATCAGGATTCCGATGACCC 65 Alt2 421 TCTGTGAGAAACTTAGTTTCTTCCAAAGTGGTTGTAACTTCTTCAACACAAGCCTTGACT
66 66
67 Alt1 481 CTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACAATACCGCAGAGT 67 Alt1 481 TTCTTTTCTTCAGCCTGTTGCTTTTGTTCAACTGAAGGTTTATTTTCAGTTGTTGGTGGC
68 | |||| ||||||| |||||||||||||||||||||||||| || ||||||| || 68 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
69 Alt2 481 CCGCTCATGTTACAAGCGGGGTTTTTCTTGTTGACAAAAATAAACAGGATACCGCGTAGA 69 Alt2 481 TTCTTTTCTTCAGCCTGTTGCTTTTGTTCAACTGAAGGTTTATTTTCAGTTGTTGGTGGC
70 70
71 Alt1 541 CTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTCTTGGCCAA 71 Alt1 541 TCAACTTCCATTTTAGGAACTTCAGCAATCTGTTGTTCTACTTGTGCCTCACTCTTCATT
72 | | | ||||||||||||||||| |||| | |||||| || ||||| ||| 72 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
73 Alt2 541 CAACAGGCGTGGTGGACTTCTCTCTCTTTTGGAAGGGGAGGACCTTTGTGTGATGGTGGG 73 Alt2 541 TCAACTTCCATTTTAGGAACTTCAGCAATCTGTTGTTCTACTTGTGCCTCACTCTTCATT
74 74
75 Alt1 601 AATTCGCAGTCCCAAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGCC 75 Alt1 601 TCTAAAAAGCTAGAAACAAGTTTTTCATAGAGATCTTTGTCAAAGACAGTCAAGTAAACA
76 || || |||||| |||||| |||||| ||| |||||||| || | ||| || 76 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
77 Alt2 601 AAATCTTAGTCCCTCGCCTCCAATCACTCTCCACCCTCTTGTGGGCCTAATTGAGGTGAG 77 Alt2 601 TCTAAAAAGCTAGAAACAAGTTTTTCATAGAGATCTTTGTCAAAGACAGTCAAGTAAACA
78 78
79 Alt1 661 TATCGCTGGATGTGTCTGCGGCGGTTTATCATCTTCCTCTTCATCGTGCTGCTATGCCTC 79 Alt1 661 TTTGTGCGAACAGTGTCTACACAAACTCTTAAGGATTGGACAGGGTCAGCACCAAAGATG
80 | ||||| | | || |||| ||||| | |||||||||| ||| | ||| | 80 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
81 Alt2 661 TCCCGCTGAAAGAAGTGGCAGCGGGGTATCACATACCTCTTCATCTTGCGGGAGAGCCGC 81 Alt2 661 TTTGTGCGAACAGTGTCTACACAAACTCTTAAGGATTGGACAGGGTCAGCACCAAAGATG
82 82
83 Alt1 721 ATCATCCTGT-TGGGTTCG-TCTGCACTATCAAAGGTATGTTGCCCCGGTTTGTCNTTNN 83 Alt1 721 CCTGCTGACAATAAAGGTGCTAGTAAAGTATCATACTGATTGAAATTTTCATATGCAGTT
84 | |||||| ||||| | || | | |||| | |||||| || | | || 84 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
85 Alt2 721 CACGTCCTGTGTGGGTGAGCTCCCCCAGAACAAAAGGGTGTTGCGGGGGGGGG--NGGNN 85 Alt2 721 CCTGCTGACAATAAAGGTGCTAGTAAAGTATCATACTGATTGAAATTTTCATATGCAGTT
86 86
87 Alt1 779 TAATTCCAAGGATC-ATGAAAGCCACCCACTACGGGAACCNTTGCCGC-----AAGCTGC 87 Alt1 781 TTAAGAAGTTGAATGCTTTCACCCTTGTTGATATTAGGACCAACAACATGAAGACAATTT
88 | || || | | | | |||||||| |||| ||| | || | 88 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
89 Alt2 779 ACAAACCGCGGGGGGAAGGAGGGAACCCACTAAAAGAACNGGTGCGGTTTCAAAAAAGGG 89 Alt2 781 TTAAGAAGTTGAATGCTTTCACCCTTGTTGATATTAGGACCAACAACATGAAGACAATTT
90 90
91 Alt1 833 ACGACTCATTTCTCAAAGGAAANTCNANGNTTTTCCCTCATNGTTGCTGT-------TCA 91 Alt1 841 TTAGCAAGATTATGTCCACTCAGAACACAACTACCACCAACATTCAGAGGTCCGTTTGTG
92 || | | || || || || | |||| |||| || |||| | | 92 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
93 Alt2 839 ACTGTTTAGTTGAGAANGGN----CNGNCATTTT---TCATANTTTCTGTGGGTGAGTAA 93 Alt2 841 TTAGCAAGATTATGTCCACTCAGAACACAACTACCACCAACATTCAGAGGTCCGTTTGTG
94 94
95 Alt1 886 AAAGCTTCGGACGGAAAATGCACATTGTAGTTNCNNATCCCATCATCAT-----GGGNTT 95 Alt1 901 GCTATGTAATTGTCTGATTCTACTTGCATAGCGTTGTTTGTAGCTTTGTTTAAAGCTCCA
96 ||| | |||| | ||| || | || | || ||| | || || | | 96 ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
97 Alt2 892 AAAAC-----ACGGGGGACGCAGATGGGAGG-NTNN-TCCAAACACCAAAAAANGAGGGA 97 Alt2 901 GCTATGTAAATGTCTGAATCTACTTGCATAGCGTTGTTTGTAGCTTTGTTTAAAGCTCCA
98 98
99 Alt1 941 TGGGAAATNCCATATGGTANNGGGCNNNAGCCCGCNTNNCCT 99 Alt1 961 GCAACACCTCCTCCATGTTTAAGTAAACATTAGCTGCATTAACAACTACTGTTGTTTCCC
100 ||| ||| ||| | | || || || | | || 100 || |||||| || ||||||||||||||||||||||||||| ||||||||||| ||||| |
101 Alt2 945 GGGGNAATT---TATTCTNNAAGGNNNGCGCAAG-NCNNTTC 101 Alt2 961 GCCACACCTTCTTCATGTTTAAGTAAACATTAGCTGCATTTACAACTACTGTGGTTTCAC
102
103 Alt1 1021 CTGTT
104 |||||
105 Alt2 1021 CTGTT
102 106
103 #------------------------------------------------------------------------- 107 #-------------------------------------------------------------------------
104 #------------------------------------------------------------------------- 108 #-------------------------------------------------------------------------
105 109
106 110