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comparison test-data/out1.align1.fasta @ 1:31599dc6380f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tracy commit 8eb3532d394f6a44d1edbcbe5ef05fd0474cdab3
author iuc
date Thu, 20 Mar 2025 07:17:06 +0000
parents 726b73198fdc
children
comparison
equal deleted inserted replaced
0:726b73198fdc 1:31599dc6380f
1 >Alt1 (Estimated allelic Fraction: 0.52) 1 >Alt1 (Estimated allelic Fraction: 0.63)
2 TCNGCNGGNGTNNTCCGTATTTTNNTTGGATCCNCATTCATAGCAAACACCANAAATCCATATTGGGACCACAA 2 ACAGGCATTAATTTACGTGTTTCCTCAGCATGTGCAAGCATTTCTCGCAAATTCCAAGAAACAGTTCCAAGAAT
3 TCCCAACAAAGACCACTGGACAGAAGCCAACAAGGTAGGAGTGGGAGCATTCGGGCCTGGGTTCACTCCCCCAC 3 TTCTTCTTTCTCATTAGAGACAATGGATGGTAGTATGTAAAAAGCGCTCTTGCACTTTTTAAGCACTGTCTTTG
4 ACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCC 4 CCTCTTCTAATGTATAACCATTATTACCCTGTCCAGGGTAGGTGGTTATATAATTGTCTACTGGTAACTTCTTT
5 TCCACCAATCGACAGTCAGGAAGGCAGCCTACCCCAATCACTCCACCTTTGAGAGACACTCATCCTCAGGCCAT 5 AATGCTTTTGTAAGCATTTCGGTAGTACCACCAGCTTTTTTAGTAGGTATAACTACAGCAGTTAAAACACCTTC
6 GCAGTGGAATTCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAATCCTGCTGGTGGCTCCAGTTCCG 6 CTTAATGACATCACCTACTATGTAAGGAGCATCTTTCTTTAGAAAGGTGGTGTCAGTGTCTTTAACAAGCATGG
7 GAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCTTCTCGAGGATTGGGGACCCTGCACCG 7 CAGAATCTGGATGAAGGTTGCCATTAATGTCTATATAAAGTAACAAATTCTCTGTGAGAAACTTAGTTTCTTCC
8 AACATGGAAAGCATCACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAA 8 AAAGTGGTTGTAACTTCTTCAACACAAGCCTTGACTTTCTTTTCTTCAGCCTGTTGCTTTTGTTCAACTGAAGG
9 AATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGTGTC 9 TTTATTTTCAGTTGTTGGTGGCTCAACTTCCATTTTAGGAACTTCAGCAATCTGTTGTTCTACTTGTGCCTCAC
10 TTGGCCAAAATTCGCAGTCCCAAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGCCTATCGC 10 TCTTCATTTCTAAAAAGCTAGAAACAAGTTTTTCATAGAGATCTTTGTCAAAGACAGTCAAGTAAACATTTGTG
11 TGGATGTGTCTGCGGCGGTTTATCATCTTCCTCTTCATCGTGCTGCTATGCCTCATCATCCTGTTGGGTTCGTC 11 CGAACAGTGTCTACACAAACTCTTAAGGATTGGACAGGGTCAGCACCAAAGATGCCTGCTGACAATAAAGGTGC
12 TGCACTATCAAAGGTATGTTGCCCCGGTTTGTCNTTNNTAATTCCAAGGATCATGAAAGCCACCCACTACGGGA 12 TAGTAAAGTATCATACTGATTGAAATTTTCATATGCAGTTTTAAGAAGTTGAATGCTTTCACCCTTGTTGATAT
13 ACCNTTGCCGCAAGCTGCACGACTCATTTCTCAAAGGAAANTCNANGNTTTTCCCTCATNGTTGCTGTTCAAAA 13 TAGGACCAACAACATGAAGACAATTTTTAGCAAGATTATGTCCACTCAGAACACAACTACCACCAACATTCAGA
14 GCTTCGGACGGAAAATGCACATTGTAGTTNCNNATCCCATCATCATGGGNTTTGGGAAATNCCATATGGTANNG 14 GGTCCGTTTGTGGCTATGTAATTGTCTGATTCTACTTGCATAGCGTTGTTTGTAGCTTTGTTTAAAGCTCCAGC
15 GGCNNNAGCCCGCNTNNCCT 15 AACACCTCCTCCATGTTTAAGTAAACATTAGCTGCATTAACAACTACTGTTGTTTCCCCTGTT
16 >Ref X75657.1 Human hepatitis virus genotype E Bas preS1 preS2 S C X antigens core antigen X protein and polymerase:1-718 forward 16 >Ref MT121216.12501-5000 Pangolin coronavirus isolate MP789 complete genome:720-1846 reversecomplement
17 TTCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAGAGGCCTGTATTTTCCTGCTGGTGGCTCCAGTT 17 CCTTGTATTTACGTTGTATGGTTGAAACTATAGCTTTAGTTTCCATACAAACAGGCATTAATTTACGTGTTTCC
18 CCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATCTCGTCAATCTTCTCGAGGATTGGGGACCCTGCA 18 TCAGCATGTGCAAGCATTTCTCGCAAATTCCAAGAAACAGTTCCAAGAATTTCTTCTTTCTCATTAGAGACAAT
19 CCGAACATGGAAAGCATCACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGAC 19 GGATGGTAGTATGTAAAAAGCGCTCTTGCACTTTTTAAGCACTGTCTTTGCCTCTTCTAATGTATAACCATTAT
20 AAAAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTGT 20 TACCCTGTCCAGGGTAGGTGGTTATATAATTGTCTACTGGTAACTTCTTTAATGCTTTTGTAAGCATTTCGGTA
21 GTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAGTCACTCACCAACCTCTTGTCCTCCAATTTGTCCTGGCTAT 21 GTACCACCAGCTTTTTTAGTAGGTATAACTACAGCAGTTAAAACACCTTCCTTAATGACATCACCTACTATGTA
22 CGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCT 22 AGGAGCATCTTTCTTTAGAAAGGTGGTGTCAGTGTCTTTAACAAGCATGGCAGAATCTGGATGAAGGTTGCCAT
23 TCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCATCAACCACCAGTACGGGACCCTGCC 23 TAATGTCTATATAAAGTAACAAATTCTCTGTGAGAAACTTAGTTTCTTCCAAAGTGGTTGTAACTTCTTCAACA
24 GAACCTGCACGACTCTTGCTCAAGGAACCTCTATGTTTCCCTCATGTTGCTGTTCAAAACCTTCGGACGGAAAT 24 CAAGCCTTGACTTTCTTTTCTTCAGCCTGTTGCTTTTGTTCAACTGAAGGTTTATTTTCAGTTGTTGGTGGCTC
25 TGCACTTGTATTCCCATCCCATCATCATGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTC 25 AACTTCCATTTTAGGAACTTCAGCAATCTGTTGTTCTACTTGTGCCTCACTCTTCATTTCTAAAAAGCTAGAAA
26 CTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGCCGGGCTTTCCCCC 26 CAAGTTTTTCATAGAGATCTTTGTCAAAGACAGTCAAGTAAACATTTGTGCGAACAGTGTCTACACAAACTCTT
27 AAGGATTGGACAGGGTCAGCACCAAAGATGCCTGCTGACAATAAAGGTGCTAGTAAAGTATCATACTGATTGAA
28 ATTTTCATATGCAGTTTTAAGAAGTTGAATGCTTTCACCCTTGTTGATATTAGGACCAACAACATGAAGACAAT
29 TTTTAGCAAGATTATGTCCACTCAGAACACAACTACCACCAACATTCAGAGGTCCGTTTGTGGCTATGTAATTG
30 TCTGATTCTACTTGCATAGCGTTGTTTGTAGCTTTGTTTAAAGCTCCAGCAACACCTCCTCCATGTTTAAGGTA
31 AACATTAGCTGCATTAACAACTACTGTTGGTTTCACCTGTTTAGCTTCTTCCACAATGTCTGCATTTTTAATGA
32 AAACATTGTTAGTGAGT
27 33
28 Alignment score: 118 34 Alignment score: 3039
29 #------------------------------------------------------------------------- 35 #-------------------------------------------------------------------------
30 36
31 Alt 1 TCNGCNGGNGTNNTCCGTATTTTNNTTGGATCCNCATTCATAGCAAACACCANAAATCCA 37 Alt 1 --------------------------------------------------ACAGGCATTA
32 | 38 ||||||||||
33 Ref 1 T----------------------------------------------------------- 39 Ref 1846 CCTTGTATTTACGTTGTATGGTTGAAACTATAGCTTTAGTTTCCATACAAACAGGCATTA
34 40
35 Alt 61 TATTGGGACCACAATCCCAACAAAGACCACTGGACAGAAGCCAACAAGGTAGGAGTGGGA 41 Alt 11 ATTTACGTGTTTCCTCAGCATGTGCAAGCATTTCTCGCAAATTCCAAGAAACAGTTCCAA
36 42 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
37 Ref 2 ------------------------------------------------------------ 43 Ref 1786 ATTTACGTGTTTCCTCAGCATGTGCAAGCATTTCTCGCAAATTCCAAGAAACAGTTCCAA
38 44
39 Alt 121 GCATTCGGGCCTGGGTTCACTCCCCCACACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCT 45 Alt 71 GAATTTCTTCTTTCTCATTAGAGACAATGGATGGTAGTATGTAAAAAGCGCTCTTGCACT
40 46 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
41 Ref 2 ------------------------------------------------------------ 47 Ref 1726 GAATTTCTTCTTTCTCATTAGAGACAATGGATGGTAGTATGTAAAAAGCGCTCTTGCACT
42 48
43 Alt 181 CAAGGCATGCTGACAACATTACCAGCAAATCCGCCTCCTGCCTCCACCAATCGACAGTCA 49 Alt 131 TTTTAAGCACTGTCTTTGCCTCTTCTAATGTATAACCATTATTACCCTGTCCAGGGTAGG
44 50 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
45 Ref 2 ------------------------------------------------------------ 51 Ref 1666 TTTTAAGCACTGTCTTTGCCTCTTCTAATGTATAACCATTATTACCCTGTCCAGGGTAGG
46 52
47 Alt 241 GGAAGGCAGCCTACCCCAATCACTCCACCTTTGAGAGACACTCATCCTCAGGCCATGCAG 53 Alt 191 TGGTTATATAATTGTCTACTGGTAACTTCTTTAATGCTTTTGTAAGCATTTCGGTAGTAC
48 54 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
49 Ref 2 ------------------------------------------------------------ 55 Ref 1606 TGGTTATATAATTGTCTACTGGTAACTTCTTTAATGCTTTTGTAAGCATTTCGGTAGTAC
50 56
51 Alt 301 TGGAATTCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAA------------T 57 Alt 251 CACCAGCTTTTTTAGTAGGTATAACTACAGCAGTTAAAACACCTTCCTTAATGACATCAC
52 |||||||||||||||||||||||||||||||||||||||| | 58 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
53 Ref 2 ------TCCACAACATTCCACCAAGCTCTGCAGGATCCCAGAGTAAGAGGCCTGTATTTT 59 Ref 1546 CACCAGCTTTTTTAGTAGGTATAACTACAGCAGTTAAAACACCTTCCTTAATGACATCAC
54 60
55 Alt 349 CCTGCTGGTGGCTCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATC 61 Alt 311 CTACTATGTAAGGAGCATCTTTCTTTAGAAAGGTGGTGTCAGTGTCTTTAACAAGCATGG
56 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 62 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
57 Ref 56 CCTGCTGGTGGCTCCAGTTCCGGAACAGTGAACCCTGTTCCGACTACTGCCTCACTCATC 63 Ref 1486 CTACTATGTAAGGAGCATCTTTCTTTAGAAAGGTGGTGTCAGTGTCTTTAACAAGCATGG
58 64
59 Alt 409 TCGTCAATCTTCTCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGA 65 Alt 371 CAGAATCTGGATGAAGGTTGCCATTAATGTCTATATAAAGTAACAAATTCTCTGTGAGAA
60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 66 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
61 Ref 116 TCGTCAATCTTCTCGAGGATTGGGGACCCTGCACCGAACATGGAAAGCATCACATCAGGA 67 Ref 1426 CAGAATCTGGATGAAGGTTGCCATTAATGTCTATATAAAGTAACAAATTCTCTGTGAGAA
62 68
63 Alt 469 TTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACA 69 Alt 431 ACTTAGTTTCTTCCAAAGTGGTTGTAACTTCTTCAACACAAGCCTTGACTTTCTTTTCTT
64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 70 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
65 Ref 176 TTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACA 71 Ref 1366 ACTTAGTTTCTTCCAAAGTGGTTGTAACTTCTTCAACACAAGCCTTGACTTTCTTTTCTT
66 72
67 Alt 529 ATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTG 73 Alt 491 CAGCCTGTTGCTTTTGTTCAACTGAAGGTTTATTTTCAGTTGTTGGTGGCTCAACTTCCA
68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 74 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
69 Ref 236 ATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCTCCCGTG 75 Ref 1306 CAGCCTGTTGCTTTTGTTCAACTGAAGGTTTATTTTCAGTTGTTGGTGGCTCAACTTCCA
70 76
71 Alt 589 TGTCTTGGCCAAAATTCGCAGTCCCAAACCTCCAGTCACTCACCAACCTCTTGTCCTCCA 77 Alt 551 TTTTAGGAACTTCAGCAATCTGTTGTTCTACTTGTGCCTCACTCTTCATTTCTAAAAAGC
72 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| 78 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
73 Ref 296 TGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAGTCACTCACCAACCTCTTGTCCTCCA 79 Ref 1246 TTTTAGGAACTTCAGCAATCTGTTGTTCTACTTGTGCCTCACTCTTCATTTCTAAAAAGC
74 80
75 Alt 649 ATTTGTCCTGCCTATCGCTGGATGTGTCTGCGGCGGTTTATCATCTTCCTCTTCATCGTG 81 Alt 611 TAGAAACAAGTTTTTCATAGAGATCTTTGTCAAAGACAGTCAAGTAAACATTTGTGCGAA
76 |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || 82 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
77 Ref 356 ATTTGTCCTGGCTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTG 83 Ref 1186 TAGAAACAAGTTTTTCATAGAGATCTTTGTCAAAGACAGTCAAGTAAACATTTGTGCGAA
78 84
79 Alt 709 CTGCTATGCCTCATCATCCTGTTGGGTTCGTCTGCACTATCAAAGGTATGTTGCCCCGGT 85 Alt 671 CAGTGTCTACACAAACTCTTAAGGATTGGACAGGGTCAGCACCAAAGATGCCTGCTGACA
80 ||||||||||||||| || |||||| ||| |||| |||||||| |||||||||||| || 86 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
81 Ref 416 CTGCTATGCCTCATCTTCTTGTTGG-TTCTTCTGGACTATCAA-GGTATGTTGCCC--GT 87 Ref 1126 CAGTGTCTACACAAACTCTTAAGGATTGGACAGGGTCAGCACCAAAGATGCCTGCTGACA
82 88
83 Alt 769 TTGTCNTTNNTAATTCCAAGGATCATGAAAGCCACCCACTACGGGAACCNTTGCCGCAAG 89 Alt 731 ATAAAGGTGCTAGTAAAGTATCATACTGATTGAAATTTTCATATGCAGTTTTAAGAAGTT
84 ||||| | |||||||| ||||||| || ||||| | ||||||| || ||||| || 90 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
85 Ref 472 TTGTCCTC--TAATTCCA-GGATCATCAA--CCACC-AGTACGGGACCC--TGCCG-AAC 91 Ref 1066 ATAAAGGTGCTAGTAAAGTATCATACTGATTGAAATTTTCATATGCAGTTTTAAGAAGTT
86 92
87 Alt 829 CTGCACGACTCATTTCTCAAAGGAAANTCNANGNTTTTCCCTCATNGTTGCTGTTCAAAA 93 Alt 791 GAATGCTTTCACCCTTGTTGATATTAGGACCAACAACATGAAGACAATTTTTAGCAAGAT
88 ||||||||||| || ||||| |||| || | | |||||||||| |||||||||||||| 94 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
89 Ref 523 CTGCACGACTC-TTGCTCAA-GGAACCTCTATG--TTTCCCTCAT-GTTGCTGTTCAAAA 95 Ref 1006 GAATGCTTTCACCCTTGTTGATATTAGGACCAACAACATGAAGACAATTTTTAGCAAGAT
90 96
91 Alt 889 GCTTCGGACGGAAAATGCACATTGTAGTTNCNNATCCCATCATCATGGGNTTTGGGAAAT 97 Alt 851 TATGTCCACTCAGAACACAACTACCACCAACATTCAGAGGTCCGTTTGTGGCTATGTAAT
92 ||||||||||||| ||||| ||||| | | |||||||||||||||| ||| ||||| 98 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
93 Ref 578 CCTTCGGACGGAAATTGCAC-TTGTATTCCC--ATCCCATCATCATGGGCTTTCGGAAAA 99 Ref 946 TATGTCCACTCAGAACACAACTACCACCAACATTCAGAGGTCCGTTTGTGGCTATGTAAT
94 100
95 Alt 949 NCCATATGGTANNGGGCNNNAGCCCGCNTNNCCT-------------------------- 101 Alt 911 TGTCTGATTCTACTTGCATAGCGTTGTTTGTAGCTTTGTTTAAAGCTCCAGCAACACCTC
96 | ||||| | |||| |||||| | ||| 102 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
97 Ref 635 TTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTT 103 Ref 886 TGTCTGATTCTACTTGCATAGCGTTGTTTGTAGCTTTGTTTAAAGCTCCAGCAACACCTC
98 104
99 Alt 983 ------------------------ 105 Alt 971 CTCCATGTTTAAG-TAAACATTAGCTGCATTAACAACTACTGTTG-TTTCCCCTGTT---
100 106 ||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||
101 Ref 695 CAGTGGTTCGCCGGGCTTTCCCCC 107 Ref 826 CTCCATGTTTAAGGTAAACATTAGCTGCATTAACAACTACTGTTGGTTTCACCTGTTTAG
108
109 Alt 1026 -----------------------------------------------
110
111 Ref 766 CTTCTTCCACAATGTCTGCATTTTTAATGAAAACATTGTTAGTGAGT
102 112
103 #------------------------------------------------------------------------- 113 #-------------------------------------------------------------------------
104 #------------------------------------------------------------------------- 114 #-------------------------------------------------------------------------
105 115
106 116