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1 ### bog standard argparse for 3 possible comma separated lists
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2 ## followed by some silly reverse each row code provided as an example
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3 ## you're supposed to replace it with your great code..
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4 import sys
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5 import argparse
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6 import copy
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7 argp=argparse.ArgumentParser()
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8 argp.add_argument('--INNAMES',default=None)
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9 argp.add_argument('--INPATHS',default=None)
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10 argp.add_argument('--OUTPATH',default=None)
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11 argp.add_argument('--additional_parameters',default=[],action="append")
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12 argp.add_argument('otherargs', nargs=argparse.REMAINDER)
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13 args = argp.parse_args()
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14 fout = open(args.OUTPATH,'w')
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15 sins = open(args.INPATHS.split(',')[0]).readlines()
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16 for i,sin in enumerate(sins):
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17 row = sin.strip().split('\t')
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18 rrow = copy.copy(row)
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19 lrow = len(row)
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20 if (lrow > 1):
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21 for j in range(lrow):
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22 rrow[j] = row[lrow-j-1]
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23 fout.write('\t'.join(rrow))
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24 fout.write('\n')
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25 fout.close()
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