Mercurial > repos > iuc > tn93_filter

comparison tn93_filter.xml @ 2:54e995e6aa39 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tn93/ commit e9f254ea1c6712a96512cae4df91bfec8207a492
author iuc
date Sat, 28 Sep 2024 16:33:29 +0000
parents cc37e773d592
children
comparison
equal deleted inserted replaced
1:cc37e773d592 2:54e995e6aa39
1 <tool id="tn93_filter" name="TN93 Filter" version="@TOOL_VERSION@+galaxy1"> 1 <tool id="tn93_filter" name="TN93 Filter" version="@TOOL_VERSION@+galaxy0">
2 <description>- remove sequences from a reference that are within a given distance of of a cluster</description> 2 <description>- remove sequences from a reference that are within a given distance of of a cluster</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"> 6 <expand macro="requirements">
7 <requirement type="package" version="1.70">biopython</requirement> 7 <requirement type="package" version="1.84">biopython</requirement>
8 </expand> 8 </expand>
9 <version_command><![CDATA[tn93 --version]]></version_command> 9 <version_command><![CDATA[tn93 --version]]></version_command>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 cat '$reads' > filtered_msa.fa && 11 cat '$reads' > filtered_msa.fa &&
12 tn93 -o pairwise.csv -s filtered_msa.fa -t $threshold '$clusters' && 12 tn93 -o pairwise.csv -s filtered_msa.fa -t $threshold '$clusters' &&