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diff tool_dependencies.xml @ 1:58eb64dff5b4 draft

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planemo upload commit 37c9a84ce3065ceab57cfb4cdd35a4a75d6ef223
author peterjc
date Sat, 04 Jul 2015 09:36:08 -0400
parents ebc6b1b18de6
children b4f1eee85d8d
line wrap: on
line diff
--- a/tool_dependencies.xml	Sat Jul 04 09:32:53 2015 -0400
+++ b/tool_dependencies.xml	Sat Jul 04 09:36:08 2015 -0400
@@ -1,11 +1,11 @@
 <?xml version='1.0' encoding='utf-8'?>
 <tool_dependency>
-    <package name="blast+" version="2.2.31">
+    <package name="blast+" version="2.2.26+">
         <install version="1.0">
             <actions_group>
                 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
                 <actions os="darwin" architecture="x86_64">
-                    <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-universal-macosx.tar.gz</action>
+                    <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-universal-macosx.tar.gz</action>
                     <action type="move_directory_files">
                          <source_directory>bin</source_directory>
                          <destination_directory>$INSTALL_DIR</destination_directory>
@@ -13,7 +13,7 @@
                 </actions>
                 <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. -->
                 <actions os="darwin" architecture="i386">
-                    <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-universal-macosx.tar.gz</action>
+                    <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-universal-macosx.tar.gz</action>
                     <action type="move_directory_files">
                         <source_directory>bin</source_directory>
                         <destination_directory>$INSTALL_DIR</destination_directory>
@@ -21,7 +21,7 @@
                 </actions>
                 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
                 <actions os="linux" architecture="x86_64">
-                    <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-x64-linux.tar.gz</action>
+                    <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-x64-linux.tar.gz</action>
                     <action type="move_directory_files">
                         <source_directory>bin</source_directory>
                         <destination_directory>$INSTALL_DIR</destination_directory>
@@ -29,7 +29,7 @@
                 </actions>
                 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i386). -->
                 <actions os="linux" architecture="i386">
-                    <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-ia32-linux.tar.gz</action>
+                    <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-ia32-linux.tar.gz</action>
                     <action type="move_directory_files">
                         <source_directory>bin</source_directory>
                         <destination_directory>$INSTALL_DIR</destination_directory>
@@ -37,7 +37,7 @@
                 </actions>
                 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i686). -->
                 <actions os="linux" architecture="i686">
-                    <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-ia32-linux.tar.gz</action>
+                    <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-ia32-linux.tar.gz</action>
                     <action type="move_directory_files">
                         <source_directory>bin</source_directory>
                         <destination_directory>$INSTALL_DIR</destination_directory>
@@ -56,7 +56,6 @@
                 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
-                    <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
                 </action>
             </actions_group>
         </install>