# HG changeset patch
# User iuc
# Date 1764868178 0
# Node ID afcb889cbce38efe597ce4f230a1029518a28099
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/telogator2 commit ff18f7a9e15883099ec1cd699533658a280dcf12
diff -r 000000000000 -r afcb889cbce3 macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Thu Dec 04 17:09:38 2025 +0000
@@ -0,0 +1,38 @@
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+ telogator2
+ minimap2
+ winnowmap
+ pbmm2
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+ 2.2.3
+ 0
+ 24.2
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+ topic_0622
+ topic_0196
+ topic_3673
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+ operation_3227
+ operation_3192
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+ telogator2
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+ 10.1186/s12859-024-05807-5
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diff -r 000000000000 -r afcb889cbce3 telogator.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/telogator.xml Thu Dec 04 17:09:38 2025 +0000
@@ -0,0 +1,348 @@
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+ Measure allele-specific telomere length from long reads
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+ macros.xml
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diff -r 000000000000 -r afcb889cbce3 telogator_make_ref.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/telogator_make_ref.xml Thu Dec 04 17:09:38 2025 +0000
@@ -0,0 +1,187 @@
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+ Create custom telogator reference from a T2T assembly
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+ macros.xml
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+ ^[a-zA-Z0-9-]+$
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diff -r 000000000000 -r afcb889cbce3 test-data/hg002-ont-1p.fa.gz
Binary file test-data/hg002-ont-1p.fa.gz has changed
diff -r 000000000000 -r afcb889cbce3 test-data/hg002-ont-1p.sub.fa.gz
Binary file test-data/hg002-ont-1p.sub.fa.gz has changed
diff -r 000000000000 -r afcb889cbce3 test-data/hg002-telreads_pacbio.sub.fa.gz
Binary file test-data/hg002-telreads_pacbio.sub.fa.gz has changed
diff -r 000000000000 -r afcb889cbce3 test-data/t2t_subset.fa.gz
Binary file test-data/t2t_subset.fa.gz has changed
diff -r 000000000000 -r afcb889cbce3 test-data/t2t_subset_with_telomeres.fa.gz
Binary file test-data/t2t_subset_with_telomeres.fa.gz has changed