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comparison tbvcfreport.xml @ 1:46e77cccd665 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit 9cd78488b53cde8d3139d2d71ec500e2c91b9335"
author iuc
date Wed, 07 Jul 2021 09:22:02 +0000
parents fb9aadd26dd4
children bda58fe79026
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0:fb9aadd26dd4 1:46e77cccd665
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <tool id="tbvcfreport" name="TB Variant Report" version="@TOOL_VERSION@+galaxy0"> 2 <tool id="tbvcfreport" name="TB Variant Report" version="@TOOL_VERSION@+galaxy0">
3 <description>- generate HTML report from SnpEff annotated M.tb VCF(s)</description> 3 <description>- generate HTML report from SnpEff annotated M.tb VCF(s)</description>
4 <macros> 4 <macros>
5 <token name="@TOOL_VERSION@">0.1.7</token> 5 <token name="@TOOL_VERSION@">0.1.8</token>
6 </macros> 6 </macros>
7 <requirements> 7 <requirements>
8 <requirement type="package" version="@TOOL_VERSION@">tbvcfreport</requirement> 8 <requirement type="package" version="@TOOL_VERSION@">tbvcfreport</requirement>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"> 10 <command detect_errors="exit_code">
84 <output name="variants_report_txt" compare="diff" lines_diff="2" file="rif_resistant_variants_report.txt" ftype="txt" /> 84 <output name="variants_report_txt" compare="diff" lines_diff="2" file="rif_resistant_variants_report.txt" ftype="txt" />
85 </test> 85 </test>
86 <test> 86 <test>
87 <param name="input_vcf" value="rif_resistant.vcf" ftype="vcf" /> 87 <param name="input_vcf" value="rif_resistant.vcf" ftype="vcf" />
88 <param name="tbprofiler_json" value="rif_resistant.results.json" ftype="json" /> 88 <param name="tbprofiler_json" value="rif_resistant.results.json" ftype="json" />
89 <output name="variants_report_html" compare="diff" lines_diff="2" file="rif_resistant_variants_report.html" ftype="html" /> 89 <output name="variants_report_html" compare="diff" lines_diff="2" file="rif_resistant_variants_report_with_lineage.html" ftype="html" />
90 <output name="variants_report_txt" compare="diff" lines_diff="2" file="rif_resistant_variants_report.txt" ftype="txt" /> 90 <output name="variants_report_txt" compare="diff" lines_diff="2" file="rif_resistant_variants_report_with_lineage.txt" ftype="txt" />
91 <output name="drug_resistance_report_html" file="rif_resistant_drug_resistance_report.html" lines_diff="2" ftype="html" /> 91 <output name="drug_resistance_report_html" file="rif_resistant_drug_resistance_report.html" lines_diff="2" ftype="html" />
92 <output name="drug_resistance_report_txt" compare="diff" lines_diff="2" file="rif_resistant_drug_resistance_report.txt" ftype="txt" /> 92 <output name="drug_resistance_report_txt" compare="diff" lines_diff="2" file="rif_resistant_drug_resistance_report.txt" ftype="txt" />
93 </test> 93 </test>
94 </tests> 94 </tests>
95 <help> 95 <help>