# HG changeset patch # User iuc # Date 1579769053 0 # Node ID c3ec6775c6747b03651c933231d473f95064eda7 # Parent 8c6e82d16ff114997f98367c88e7e082b44f5a84 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 53f6ccebd38e89bb2e67b2eec3aee30b4e141b5b" diff -r 8c6e82d16ff1 -r c3ec6775c674 tb_profiler_profile.xml --- a/tb_profiler_profile.xml Wed Jan 22 19:53:49 2020 +0000 +++ b/tb_profiler_profile.xml Thu Jan 23 08:44:13 2020 +0000 @@ -1,4 +1,4 @@ - + Infer strain types and drug resistance markers from sequences macros.xml @@ -41,13 +41,10 @@ --threads "\${GALAXY_SLOTS:-1}" #if $advanced.options == 'yes' - '${advanced.call_whole_genome}' - --call_method '${advanced.call_method}' - --min_gene_frac '${advanced.min_gene_frac}' --mapper '${advanced.mapper}' --min_depth '${advanced.min_depth}' - --af '${min_allel_freq}' - --reporting_af '${min_allel_freq_reporting}' + --af '${advanced.min_allele_freq}' + --reporting_af '${advanced.min_allele_freq_reporting}' #end if #if $output_format == "pdf" @@ -105,24 +102,14 @@ - - - - - - - - - - - - + + + @@ -171,6 +158,24 @@ + + + + + + + + + + + + + + + + + +