Mercurial > repos > iuc > tb_profiler_collate
diff test-data/example.vcf @ 0:5b218b5eedb6 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/tb-profiler commit 7dba70c70c9fe33353a0fd21803b11cfddc42c32
| author | iuc |
|---|---|
| date | Tue, 21 Oct 2025 10:24:27 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/example.vcf Tue Oct 21 10:24:27 2025 +0000 @@ -0,0 +1,18 @@ +##fileformat=VCFv4.0 +##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> +##INFO=<ID=AC,Number=.,Type=Integer,Description="Allele Count"> +##INFO=<ID=AN,Number=1,Type=Integer,Description="Number of Alleles With Data"> +##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT X1 X2 X3 X4 X5 X6 +1 10 1:10 A T 100 PASS NS=5;AC=0;AN=10;AF=0.000000 GT 0/0 ./. 0/0 0/0 0/0 0/0 +1 20 1:20 G C 100 PASS NS=0;AC=0;AN=0 GT ./. ./. ./. ./. ./. ./. +1 30 1:30 C A 100 PASS NS=6;AC=0;AN=12;AF=0.000000 GT 0/0 0/0 0/0 0/0 0/0 0/0 +1 40 1:40 A C 100 PASS NS=6;AC=0;AN=12;AF=0.000000 GT 0/0 0/0 0/0 0/0 0/0 0/0 +1 10000 1:10000 G C 100 PASS NS=6;AC=0;AN=12;AF=0.000000 GT 0/0 0/0 0/0 0/0 0/0 0/0 +1 20000 1:20000 T A 100 PASS NS=6;AC=12;AN=12;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 1/1 +4 5000 4:5000 A T 100 PASS NS=6;AC=12;AN=12;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 1/1 +4 6000 4:6000 C T 100 PASS NS=6;AC=11;AN=12;AF=0.916667 GT 1/1 1/1 1/1 1/1 0/1 1/1 +X 800 X:800 A C 100 PASS NS=6;AC=12;AN=12;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 1/1 +X 900 X:900 A T 100 PASS NS=6;AC=12;AN=12;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 1/1 +X 1000 X:1000 T G 100 PASS NS=5;AC=10;AN=10;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 ./.