Mercurial > repos > iuc > syri
view test-data/aln.paf @ 1:0d8128a8623e draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/syri commit cb48fa8b0d1a3e4e2483b4b0ecea6011d4f71200
| author | iuc |
|---|---|
| date | Mon, 28 Apr 2025 07:17:49 +0000 |
| parents | 27a56ecc88ee |
| children |
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NC_047487.1 235665 56385 57398 + NC_001133.9 230218 66192 67205 964 1013 60 tp:A:P NM:i:49 mm:i:49 gn:i:0 go:i:0 cg:Z:29=1X8=1X2=1X14=1X8=1X14=1X24=2X14=1X6=2X2=1X1=1X17=1X56=1X8=1X11=1X9=1X1=1X37=1X14=1X9=1X8=1X8=1X5=1X8=1X4=1X2=1X2=1X20=1X11=2X50=1X71=1X23=1X11=1X107=1X11=1X11=1X32=1X47=1X14=1X59=1X41=1X5=1X17=1X2=1X53=1X14=1X44= NC_047487.1 235665 61859 63430 + NC_001133.9 230218 71755 73326 1542 1571 60 tp:A:P NM:i:29 mm:i:29 gn:i:0 go:i:0 cg:Z:77=1X95=1X95=1X98=1X14=1X20=1X38=1X86=1X109=2X137=1X5=1X62=1X17=1X14=1X17=1X125=1X44=1X35=1X59=1X8=1X44=1X137=1X12=1X19=1X62=1X10=1X3=1X5=1X95= NC_047487.1 235665 120747 121853 + NC_001133.9 230218 130796 131902 1054 1106 60 tp:A:P NM:i:52 mm:i:52 gn:i:0 go:i:0 cg:Z:43=1X17=1X17=1X2=1X17=1X35=1X152=1X44=1X32=1X2=1X12=1X31=1X14=1X11=1X11=1X11=1X8=1X8=1X38=1X20=1X23=1X8=1X8=1X14=1X26=1X14=1X50=1X17=1X26=1X2=1X45=1X9=1X3=1X8=1X9=1X43=1X20=1X5=1X14=1X50=1X11=1X5=1X2=1X23=1X2=1X21=1X4=1X11=1X8=1X8=1X8=1X5=1X27= NC_047487.1 235665 129546 131480 + NC_001133.9 230218 139502 141436 1853 1934 60 tp:A:P NM:i:81 mm:i:81 gn:i:0 go:i:0 cg:Z:33=1X32=1X5=1X3=1X1=1X5=1X2=1X2=2X40=1X17=1X9=1X20=1X1=1X47=1X5=1X1=1X132=1X35=1X26=1X8=1X20=1X2=1X2=1X5=1X5=1X5=1X23=1X50=1X35=1X23=1X8=1X5=1X11=1X2=1X112=1X96=1X50=1X17=1X8=1X11=1X56=1X32=1X29=1X11=1X11=1X8=1X2=1X5=1X26=1X7=1X23=1X99=1X89=1X23=1X11=1X2=1X11=1X2=1X107=1X6=1X7=1X2=1X17=1X14=1X14=1X38=1X22=1X12=1X8=1X3=1X19=1X35=1X47=1X1=1X18=1X14=1X2=1X32=1X11=1X17=1X46= NC_047487.1 235665 132624 133447 + NC_001133.9 230218 142575 143399 798 825 60 tp:A:P NM:i:27 mm:i:24 gn:i:3 go:i:3 cg:Z:182=1X11=1X2=1X2=1X2=1X35=1X32=1X2=1X83=1X6=1X43=1X8=1X62=1X10=1X9=1X5=1X13=2X2=1X5=1X53=1X2=1I22=1X5=1X38=1D32=1D44=1X88= NC_047488.1 835812 7093 8590 + NC_001134.8 813184 38 1542 1469 1504 60 tp:A:P NM:i:35 mm:i:28 gn:i:7 go:i:3 cg:Z:63=1X14=1X3=2X50=1X5=3D18=1X7=1X8=1D37=1X57=3D5=1X72=1X41=1X7=1X11=1X8=1X24=1X18=1X81=1X51=1X141=1X10=1X26=1X275=1X41=1X45=1X46=1X137=1X31=1X102=1X35= NC_047488.1 835812 172 1669 + NC_001134.8 813184 38 1542 1467 1505 60 tp:A:P NM:i:38 mm:i:29 gn:i:9 go:i:5 cg:Z:63=1X14=1X3=2X50=1X5=3D18=1X7=1X8=1D11=1D25=1X57=3D5=1X72=1X41=1X7=1X11=1X8=1X24=1X18=1X81=1X51=1X141=1X10=1X26=1X275=1X41=1X45=1X46=1X137=1I1X31=1X84=1X17=1X35= NC_047489.1 357685 356000 357497 - NC_001134.8 813184 38 1542 1468 1504 60 tp:A:P NM:i:36 mm:i:29 gn:i:7 go:i:3 cg:Z:63=1X14=1X3=2X50=1X5=3D18=1X7=1X8=1D37=1X57=3D5=1X72=1X41=1X7=1X11=1X8=1X24=1X18=1X81=1X51=1X141=1X10=1X26=1X275=1X41=1X45=1X46=1X137=1X31=1X32=1X69=1X35= NC_047489.1 357685 349010 350507 - NC_001134.8 813184 38 1542 1468 1504 60 tp:A:P NM:i:36 mm:i:29 gn:i:7 go:i:3 cg:Z:63=1X14=1X3=2X50=1X5=3D18=1X7=1X8=1D37=1X57=3D5=1X72=1X49=1X20=1X24=1X18=1X81=1X51=1X141=1X10=1X26=1X275=1X41=1X23=1X21=1X46=1X91=1X45=1X31=1X84=1X17=1X35= NC_047488.1 835812 834047 835519 - NC_001134.8 813184 63 1542 1444 1479 60 tp:A:P NM:i:35 mm:i:28 gn:i:7 go:i:3 cg:Z:38=1X14=1X3=2X50=1X5=3D18=1X7=1X8=1D37=1X57=3D5=1X72=1X41=1X7=1X11=1X8=1X24=1X18=1X81=1X51=1X141=1X10=1X26=1X275=1X41=1X45=1X46=1X137=1X31=1X102=1X35= NC_047488.1 835812 8983 13579 + NC_001134.8 813184 2415 5846 3359 4625 60 tp:A:P NM:i:1266 mm:i:43 gn:i:1223 go:i:12 cg:Z:20=1X31=1X161=1D68=1X195=1X56=1D64=1X43=1X187=1X25=1X21=1X261=1X48=1X84=1X153=1X75=1X109=465I46=31I29=24I4=1X19=1X4=32I17=14I8=1X47=601I1=1X8=1X15=1X38=1X56=1X8=1X7=1X9=1X5=1X35=1X5=1X48=1X30=2X41=1X3=1X249=1X3=1X264=1X86=5D12=1X4=21D6=1X48=1X55=1D29=1X137=27I182=1X12=1X94=1X94= NC_047488.1 835812 829058 833654 - NC_001134.8 813184 2415 5846 3358 4625 60 tp:A:P NM:i:1267 mm:i:44 gn:i:1223 go:i:12 cg:Z:20=1X31=1X161=1D68=1X195=1X56=1D64=1X51=1X179=1X25=1X21=1X131=1X129=1X48=1X84=1X153=1X75=1X109=465I46=31I29=24I4=1X19=1X4=32I17=14I8=1X47=601I1=1X8=1X15=1X38=1X56=1X8=1X7=1X9=1X5=1X35=1X5=1X48=1X30=2X41=1X3=1X249=1X3=1X264=1X86=5D12=1X4=21D6=1X48=1X55=1D29=1X137=27I182=1X12=1X94=1X94= NC_047489.1 357685 350992 355604 - NC_001134.8 813184 2415 5846 3356 4642 60 tp:A:P NM:i:1286 mm:i:45 gn:i:1241 go:i:26 cg:Z:20=1X31=1X161=1D68=1X3=1D191=1X26=1I30=1D64=1X43=1X19=1I17=1I76=1I75=1X17=1I6=1I2=1X21=1X73=1X2=1X36=1I27=1I121=1X13=1I35=1X84=1X23=1I130=1X60=1I15=1X109=465I51=32I24=24I4=1X19=1X4=32I17=14I8=1X33=1I14=604I1=1X8=1X15=1X38=1X56=1X8=1X7=1X9=1X5=1X35=1X5=1X48=1X29=1I1=2X41=1X3=1X249=1X3=1X264=1X86=5D12=1X4=21D6=1X48=1X55=1D29=1X137=27I182=1X12=1X94=1X94= NC_047489.1 357685 346998 348617 - NC_001134.8 813184 2415 4036 1604 1621 60 tp:A:P NM:i:17 mm:i:15 gn:i:2 go:i:2 cg:Z:20=1X31=1X161=1D68=1X195=1X56=1D64=1X43=1X187=1X25=1X21=1X261=1X48=1X84=1X153=1X75=1X64=1X48= NC_047488.1 835812 2090 6670 + NC_001134.8 813184 2436 5846 3328 4620 60 tp:A:P NM:i:1292 mm:i:42 gn:i:1250 go:i:41 cg:Z:31=1X34=1I36=1I91=1D68=1X39=1I27=1D16=1I79=1D23=1I9=1X18=1D20=1D15=2D26=1I38=1X26=1D16=1X99=1D87=1X17=1D7=1X21=1X41=1D16=1I27=1I96=1D79=1X48=1X29=2I55=1X149=1I4=1X11=1I64=1X83=1D25=465I46=31I29=23I4=1X19=1X4=32I17=14I8=1X47=598I1=1X8=1X15=1X38=1X56=1X8=1X7=1X9=1X5=1X35=1X5=1X48=1X30=2X41=1X3=1X185=1I42=1I22=1X3=1X194=1I70=1X86=5D12=1X4=21D6=1X48=1X49=1I6=1D17=1I12=1X45=1I92=27I127=1I45=1I10=1X12=1X94=1X94= NC_047489.1 357685 344021 346306 - NC_001134.8 813184 4162 5846 1631 2312 60 tp:A:P NM:i:681 mm:i:26 gn:i:655 go:i:5 cg:Z:47=601I1=1X8=1X15=1X38=1X56=1X8=1X7=1X9=1X5=1X35=1X5=1X48=1X30=2X41=1X3=1X249=1X3=1X264=1X86=5D12=1X4=21D6=1X48=1X55=1D29=1X137=27I182=1X12=1X94=1X94= NC_047488.1 835812 65809 66368 + NC_001134.8 813184 45961 46520 543 559 60 tp:A:P NM:i:16 mm:i:16 gn:i:0 go:i:0 cg:Z:75=1X24=1X64=1X14=1X113=1X23=1X26=1X14=1X3=1X1=1X53=1X15=1X13=1X32=1X24=1X19=1X30= NC_047488.1 835812 108197 108915 + NC_001134.8 813184 88415 89138 706 723 60 tp:A:P NM:i:17 mm:i:12 gn:i:5 go:i:2 cg:Z:66=3D9=2D4=1X3=2X155=1X5=1X61=1X16=1X31=1X131=1X32=1X44=1X8=1X141= NC_047488.1 835812 182901 184330 + NC_001134.8 813184 162891 164308 1356 1429 60 tp:A:P NM:i:73 mm:i:61 gn:i:12 go:i:8 cg:Z:29=1I22=1I37=4I3=1X6=1I9=1X21=2X4=2I3=1X43=1X5=1X2=1X38=1X29=1X26=1X4=1X26=1X9=1X77=1X11=1X8=1X17=1X20=1X95=1X5=1X11=1X35=1X8=1X20=1X29=1X2=1X29=1X25=1X51=1X20=1X44=1X2=1X1=1X33=4X5=1X50=1X20=1X8=1X2=1X5=1X7=1X3=1X5=1X59=1X14=1X11=1X46=1X12=1X3=1I47=1X4=1X12=1X2=1X4=1X13=2X7=1I12=1X14=1I102=1X30= NC_047488.1 835812 188856 189535 + NC_001134.8 813184 168796 169475 667 679 60 tp:A:P NM:i:12 mm:i:12 gn:i:0 go:i:0 cg:Z:192=1X68=1X14=1X20=1X74=1X104=1X77=1X31=1X10=2X9=1X4=1X64= NC_047488.1 835812 272210 273735 + NC_001134.8 813184 257211 258740 1467 1530 60 tp:A:P NM:i:63 mm:i:57 gn:i:6 go:i:3 cg:Z:51=1X16=1X5=1X14=1X2=1X2=1X11=1X35=1X35=1X26=1X5=1X5=1X35=1X11=1X8=1X53=1X7=1X5=1X54=1X83=1X41=1X14=1X14=1X62=1X158=1X23=1X22=1X11=4D13=1X19=1X26=1X33=1X7=1X22=1X31=1X2=2X63=1D1X4=1X5=1X3=1X16=1X3=1X16=1X13=1X14=1X49=1X13=1X6=1X37=1X2=1X41=1X31=1I45=1X2=1X24=1X20=1X13=1X26=1X60= NC_047488.1 835812 275841 276726 + NC_001134.8 813184 266376 267261 865 885 60 tp:A:P NM:i:20 mm:i:20 gn:i:0 go:i:0 cg:Z:83=1X17=1X6=1X2=1X6=1X53=1X1=1X13=2X19=1X6=1X118=1X78=1X110=1X49=1X142=1X25=1X34=1X9=1X72=1X22= NC_047488.1 835812 309607 310655 + NC_001134.8 813184 300148 301196 1018 1048 60 tp:A:P NM:i:30 mm:i:30 gn:i:0 go:i:0 cg:Z:25=1X47=1X47=1X17=1X32=1X23=1X2=1X155=1X35=1X2=1X17=1X26=1X2=1X17=1X200=1X8=1X20=1X8=1X6=1X1=1X38=1X20=1X8=1X44=1X11=1X17=1X29=1X11=1X83=1X5=1X62= NC_047488.1 835812 343137 343606 + NC_001134.8 813184 333382 333851 459 469 60 tp:A:P NM:i:10 mm:i:10 gn:i:0 go:i:0 cg:Z:69=1X53=1X50=1X35=1X29=1X2=1X35=1X11=1X77=1X24=1X74= NC_047488.1 835812 424159 424876 + NC_001134.8 813184 414061 414778 701 717 60 tp:A:P NM:i:16 mm:i:16 gn:i:0 go:i:0 cg:Z:44=2X6=1X6=1X61=1X143=1X5=1X11=1X11=1X8=1X56=1X53=1X44=1X23=1X128=1X71=1X31= NC_047488.1 835812 487924 489407 + NC_001134.8 813184 477645 479128 1468 1483 60 tp:A:P NM:i:15 mm:i:15 gn:i:0 go:i:0 cg:Z:540=2X157=1X86=1X8=1X35=1X35=1X92=1X8=1X33=1X1=1X23=1X137=1X8=1X164=1X141= NC_047488.1 835812 501232 503629 + NC_001134.8 813184 490905 493299 2272 2413 60 tp:A:P NM:i:141 mm:i:106 gn:i:35 go:i:7 cg:Z:19=1X16=1X62=1X17=1X15=1X14=14D10=1X3=1X6=1X13=7I1X59=1X3=1X15=2D7=1X8=1X16=1X18=1I9=1X25=1X55=1X3=1X44=1X80=1X14=1X35=1X11=1X11=1X8=1X7=1X3=1X11=1X11=1X2=1X56=1X86=1X20=1X20=1X2=1X2=1X23=1X32=1X11=1X8=1X14=1X8=1X5=1X14=1X62=1X2=1X5=1X32=1X11=1X11=1X1=1X9=1X23=1X23=1X11=1X44=1X17=1X11=1X17=1X29=1X8=1X5=1X26=1X20=1X11=1X8=1X8=1X8=1X11=1X95=1X2=1X8=1X44=1X41=1X5=1X137=1X20=1X14=1X50=1X11=1X26=1X37=1I2=1X2=1X4=1X2=1X10=1X12=1X1=1X22=1X2=1X48=2I61=1X66=8I40=1X2=2X17=1X2=1X8=1X6=3X2=1X23=1X23=1X2=1X13=2X68= NC_047488.1 835812 606542 607259 + NC_001134.8 813184 591711 592428 702 717 60 tp:A:P NM:i:15 mm:i:15 gn:i:0 go:i:0 cg:Z:39=1X23=1X170=1X95=1X40=1X12=1X14=1X2=1X20=1X22=1X51=1X20=1X32=1X17=1X68=1X77= NC_047488.1 835812 619872 620529 + NC_001134.8 813184 604924 605581 641 657 60 tp:A:P NM:i:16 mm:i:16 gn:i:0 go:i:0 cg:Z:37=1X35=1X40=1X27=1X5=1X14=1X11=1X194=1X5=1X2=1X5=1X38=1X53=1X44=1X75=1X15=1X41= NC_047488.1 835812 621622 622249 + NC_001134.8 813184 606641 607268 615 627 60 tp:A:P NM:i:12 mm:i:12 gn:i:0 go:i:0 cg:Z:24=1X173=1X74=1X2=1X5=1X68=1X26=1X14=1X77=1X52=1X56=2X44= NC_047488.1 835812 816671 817987 + NC_001134.8 813184 800337 801653 1259 1317 60 tp:A:P NM:i:58 mm:i:56 gn:i:2 go:i:2 cg:Z:64=1X9=1X1=1X18=1X3=1X4=1I13=1X3=1X11=1D14=1X2=1X5=1X95=1X27=1X1=1X33=1X1=1X26=1X9=1X5=1X3=2X6=1X10=1X6=1X15=1X12=1X47=1X18=1X32=1X28=1X22=1X36=1X4=1X15=1X8=1X14=1X2=1X23=1X11=1X2=1X65=1X32=1X26=1X7=1X12=1X2=1X9=1X34=1X83=1X47=1X5=1X29=1X9=1X85=1X86=1X2=1X17=1X51= NC_047489.1 357685 42338 43408 + NC_001135.5 316620 11941 13009 1051 1070 60 tp:A:P NM:i:19 mm:i:17 gn:i:2 go:i:1 cg:Z:59=1X8=1X56=1X17=2X12=1X15=1X3=1X16=1X8=1X5=1X2=1X11=1X29=1X38=1X98=2I622=1X2=1X50= NC_047489.1 357685 43937 44281 + NC_001135.5 316620 13536 13880 335 344 60 tp:A:P NM:i:9 mm:i:9 gn:i:0 go:i:0 cg:Z:32=1X5=1X2=1X5=1X8=1X17=1X2=1X6=1X11=1X247= NC_047489.1 357685 164057 165365 + NC_001135.5 316620 137701 139009 1286 1308 60 tp:A:P NM:i:22 mm:i:22 gn:i:0 go:i:0 cg:Z:55=1X203=1X95=1X8=1X5=1X71=1X2=1X29=1X2=1X65=1X98=1X146=1X9=1X19=1X11=1X11=1X38=1X26=1X25=1X156=1X33=1X85=1X94= NC_047489.1 357685 204941 205450 + NC_001135.5 316620 177407 177909 489 509 60 tp:A:P NM:i:20 mm:i:13 gn:i:7 go:i:1 cg:Z:48=1X13=1X17=7I48=1X8=1X68=1X5=1X71=1X47=1X5=1X17=1X2=1X59=1X29=1X52= NC_047489.1 357685 217908 219069 + NC_001135.5 316620 190368 191529 1099 1161 60 tp:A:P NM:i:62 mm:i:62 gn:i:0 go:i:0 cg:Z:33=1X8=1X18=2X1=1X93=1X13=1X2=1X28=1X7=1X1=1X1=1X44=1X38=1X14=1X30=1X9=1X33=1X6=1X3=1X18=1X2=1X11=1X6=1X5=1X4=1X5=1X20=1X20=1X5=1X5=1X11=1X8=1X6=1X10=1X14=1X12=1X7=1X53=1X17=1X152=1X38=1X2=1X17=1X6=1X1=1X2=1X11=1X14=1X26=1X26=1X32=1X44=1X2=1X5=1X5=1X5=1X2=1X26=1X2=1X5=1X17=1X38= NC_047489.1 357685 226438 227692 + NC_001135.5 316620 198919 200169 1219 1254 60 tp:A:P NM:i:35 mm:i:31 gn:i:4 go:i:1 cg:Z:33=1X7=2X2=1X7=1X18=1X14=1X8=1X5=1X11=1X14=1X26=1X5=1X14=1X5=1X59=1X8=1X56=1X17=2X12=1X15=1X3=1X16=1X8=1X5=1X2=1X11=1X68=1X98=4I620=1X2=1X50= NC_047489.1 357685 228217 228560 + NC_001135.5 316620 200696 201040 334 344 60 tp:A:P NM:i:10 mm:i:9 gn:i:1 go:i:1 cg:Z:32=1X5=1X2=1X5=1X8=1X10=1D6=1X2=1X6=1X11=1X247= NC_047489.1 357685 321006 321716 + NC_001135.5 316620 293028 293736 708 710 60 tp:A:P NM:i:2 mm:i:0 gn:i:2 go:i:1 cg:Z:98=2I610=