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planemo upload for repository https://github.com/galaxyproject/tools-iuc/main/tools/swissmodel_modelling_api commit 43b5bef8757185b4c077effd0bad846f25d408db
author iuc
date Thu, 11 Dec 2025 19:32:01 +0000
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1 ============================================
2 SWISS-MODEL Modelling API Galaxy integration
3 ============================================
4
5 This is a wrapper for the
6 `SWISS-MODEL API <https://swissmodel.expasy.org/docs/help#modelling_api>`_.
7
8 `SWISS-MODEL <https://swissmodel.expasy.org/>`_ is a web-based integrated
9 service dedicated to protein structure homology modelling.
10
11 With the API wrapper, you are able to build protein models
12
13 - fully automated (Automodel mode)
14 - for a specific alignment provided by the user (Alignment mode)
15 - based on user provider template coordinates (User template mode)
16
17 Models can be created in ModelCIF format and legacy PDB format.
18
19 Documentation on how to use the tool inside Galaxy is in the tool XML file.
20
21 Installation
22 ------------
23
24 Needs Python (>=3.11) and the Python requests package (2.32.5).
25
26 Attribution
27 -----------
28
29 When you publish or report results using SWISS-MODEL, please cite the relevant
30 publications found on https://swissmodel.expasy.org/docs/references (and on the
31 Galaxy tool page, once installed).
32
33 License
34 -------
35
36 License of this Galaxy tool wrapper can be found in `LICENSE <LICENSE>`_.
37
38 Terms of use of the SWISS-MODEL server can be found at
39 https://swissmodel.expasy.org/docs/terms_of_use.
40
41 Modelling results of SWISS-MODEL are licensed under the
42 `CC BY-SA 4.0 Creative Commons Attribution-ShareAlike 4.0 International License <https://creativecommons.org/licenses/by-sa/4.0/legalcode>`_.