Mercurial > repos > iuc > suite_mothur

changeset 15:b9b84b5a59d7 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit dfdd4c590370ecb3a9806314d43eb5668e36a01a"
author iuc
date Thu, 21 Jan 2021 23:32:58 +0000
parents 3c9bd5039329
children
files repository_dependencies.xml
diffstat 1 files changed, 129 insertions(+), 129 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Tue Dec 08 12:39:02 2020 +0000
+++ b/repository_dependencies.xml	Thu Jan 21 23:32:58 2021 +0000
@@ -1,132 +1,132 @@
 <?xml version="1.0" ?>
 <repositories description="A suite of tools designed to bring the mothur project into Galaxy.">
-    <repository owner="iuc" name="mothur_classify_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="35914be48bbd"/>
-    <repository owner="iuc" name="mothur_create_database" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="efd8ee28a7c2"/>
-    <repository owner="iuc" name="mothur_make_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="fe2b6f68bfde"/>
-    <repository owner="iuc" name="mothur_screen_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="0b91839225a9"/>
-    <repository owner="iuc" name="mothur_remove_otulabels" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="03dbf9b998f1"/>
-    <repository owner="iuc" name="mothur_reverse_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="d086a44cc47f"/>
-    <repository owner="iuc" name="mothur_merge_files" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="433c1aa622cb"/>
-    <repository owner="iuc" name="mothur_mantel" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1b8f6d7c7a26"/>
-    <repository owner="iuc" name="mothur_filter_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b6e94f142a88"/>
-    <repository owner="iuc" name="mothur_chop_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2dc50ddb915d"/>
-    <repository owner="iuc" name="mothur_get_oturep" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="da46850d199b"/>
-    <repository owner="iuc" name="mothur_summary_single" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="307c601246e5"/>
-    <repository owner="iuc" name="mothur_classify_tree" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="669e21b570c8"/>
-    <repository owner="iuc" name="mothur_trim_flows" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="52f47309b973"/>
-    <repository owner="iuc" name="mothur_rarefaction_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="46125f8e6da6"/>
-    <repository owner="iuc" name="mothur_phylo_diversity" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="669c096734ff"/>
-    <repository owner="iuc" name="mothur_get_otulabels" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="dc8001b8cdfb"/>
-    <repository owner="iuc" name="mothur_merge_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e3a3eb1f367e"/>
-    <repository owner="iuc" name="mothur_get_lineage" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="742c5b30a9f6"/>
-    <repository owner="iuc" name="mothur_make_lookup" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="cbfe5b31150d"/>
-    <repository owner="iuc" name="mothur_cluster_classic" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e3c63dd6a1f1"/>
-    <repository owner="iuc" name="mothur_libshuff" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6695f66491b2"/>
-    <repository owner="iuc" name="mothur_count_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="342abb09099a"/>
-    <repository owner="iuc" name="mothur_venn" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="78921e1d8022"/>
-    <repository owner="iuc" name="mothur_get_label" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ec9d96705a6b"/>
-    <repository owner="iuc" name="mothur_summary_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="46053bddfd49"/>
-    <repository owner="iuc" name="mothur_make_group" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="bdec2be88edf"/>
-    <repository owner="iuc" name="mothur_dist_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6636ee0355d4"/>
-    <repository owner="iuc" name="mothur_make_biom" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e876974ad709"/>
-    <repository owner="iuc" name="mothur_homova" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6730fc224315"/>
-    <repository owner="iuc" name="mothur_sffinfo" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="84a53779befd"/>
-    <repository owner="iuc" name="mothur_trim_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="982c0d104b87"/>
-    <repository owner="iuc" name="mothur_get_mimarkspackage" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a9a6305ec3c6"/>
-    <repository owner="iuc" name="mothur_remove_rare" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="71831755a66b"/>
-    <repository owner="iuc" name="mothur_list_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="06f78adc24e9"/>
-    <repository owner="iuc" name="mothur_list_otulabels" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b6a151c2b094"/>
-    <repository owner="iuc" name="mothur_clearcut" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="734bc7127592"/>
-    <repository owner="iuc" name="mothur_cluster_fragments" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="d3429cd5ee0a"/>
-    <repository owner="iuc" name="mothur_collect_single" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="cf33d0c5f768"/>
-    <repository owner="iuc" name="mothur_degap_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8fb56d4aea67"/>
-    <repository owner="iuc" name="mothur_anosim" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="38bf57196a00"/>
-    <repository owner="iuc" name="mothur_get_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="14997ae372a3"/>
-    <repository owner="iuc" name="mothur_merge_taxsummary" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2ce940d59af1"/>
-    <repository owner="iuc" name="mothur_pca" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="383001f1a9c5"/>
-    <repository owner="iuc" name="mothur_amova" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3d8ac5e11c4c"/>
-    <repository owner="iuc" name="mothur_shhh_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="54f4d604a34a"/>
-    <repository owner="iuc" name="mothur_otu_hierarchy" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="fc99e10e7b62"/>
-    <repository owner="iuc" name="mothur_sens_spec" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="660953963440"/>
-    <repository owner="iuc" name="mothur_primer_design" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="86d75f735a9d"/>
-    <repository owner="iuc" name="mothur_classify_otu" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="32c96f88e524"/>
-    <repository owner="iuc" name="mothur_split_abund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8965edccc6fb"/>
-    <repository owner="iuc" name="mothur_tree_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="5ec5790b9ae7"/>
-    <repository owner="iuc" name="mothur_sub_sample" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="daea161e90a0"/>
-    <repository owner="iuc" name="mothur_get_coremicrobiome" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2d4d25f7dff5"/>
-    <repository owner="iuc" name="mothur_summary_tax" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="0bd44371efc0"/>
-    <repository owner="iuc" name="mothur_sort_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c5537f7444cd"/>
-    <repository owner="iuc" name="mothur_make_sra" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="f68b11bca7e5"/>
-    <repository owner="iuc" name="mothur_summary_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="bc8534119381"/>
-    <repository owner="iuc" name="mothur_make_design" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="0b4c3d20fcc9"/>
-    <repository owner="iuc" name="mothur_remove_otus" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="14c9aae52d47"/>
-    <repository owner="iuc" name="mothur_unifrac_weighted" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="87d0ee9d855f"/>
-    <repository owner="iuc" name="mothur_filter_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="865eb983864f"/>
-    <repository owner="iuc" name="mothur_fastq_info" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e0a64e7b434f"/>
-    <repository owner="iuc" name="mothur_biom_info" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="eebf60a15566"/>
-    <repository owner="iuc" name="mothur_get_dists" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1737d2132e8d"/>
-    <repository owner="iuc" name="mothur_align_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ffc0e110d7f4"/>
-    <repository owner="iuc" name="mothur_get_sharedseqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="d81a8fd0537b"/>
-    <repository owner="iuc" name="mothur_unique_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e1aca78ac4f8"/>
-    <repository owner="iuc" name="mothur_pre_cluster" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ae78e643f3a2"/>
-    <repository owner="iuc" name="mothur_seq_error" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ff0a5b72cc0f"/>
-    <repository owner="iuc" name="mothur_make_lefse" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="32c98b7ead9e"/>
-    <repository owner="iuc" name="mothur_chimera_slayer" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="684764ddbe82"/>
-    <repository owner="iuc" name="mothur_deunique_tree" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b3fd6b63681d"/>
-    <repository owner="iuc" name="mothur_chimera_uchime" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="bbfdbe08e2ac"/>
-    <repository owner="iuc" name="mothur_get_relabund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="55505c0c20c4"/>
-    <repository owner="iuc" name="mothur_make_fastq" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="f4ea38696ee0"/>
-    <repository owner="iuc" name="mothur_collect_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="62b52310594b"/>
-    <repository owner="iuc" name="mothur_chimera_vsearch" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="386c619ba5a7"/>
-    <repository owner="iuc" name="mothur_pcr_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="f99582baf46c"/>
-    <repository owner="iuc" name="mothur_lefse" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="71964f0d806e"/>
-    <repository owner="iuc" name="mothur_get_sabund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="cad7c3eab83e"/>
-    <repository owner="iuc" name="mothur_remove_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="12bab8b804b1"/>
-    <repository owner="iuc" name="mothur_cluster" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="7358746b5637"/>
-    <repository owner="iuc" name="mothur_unifrac_unweighted" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c74ee34213f1"/>
-    <repository owner="iuc" name="mothur_chimera_bellerophon" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="7d161e64bff8"/>
-    <repository owner="iuc" name="mothur_consensus_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="dfd9d90d8371"/>
-    <repository owner="iuc" name="mothur_merge_count" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6fe083e1037e"/>
-    <repository owner="iuc" name="mothur_get_otus" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="f8725e6e6524"/>
-    <repository owner="iuc" name="mothur_dist_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="d84536be2903"/>
-    <repository owner="iuc" name="mothur_pcoa" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="762931518351"/>
-    <repository owner="iuc" name="mothur_parse_list" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b5e30dc08f74"/>
-    <repository owner="iuc" name="mothur_chimera_perseus" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="0a248d67cc31"/>
-    <repository owner="iuc" name="mothur_mimarks_attributes" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="aee208d13301"/>
-    <repository owner="iuc" name="mothur_heatmap_bin" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6066c1ced261"/>
-    <repository owner="iuc" name="mothur_remove_lineage" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="21bb3e2be6ec"/>
-    <repository owner="iuc" name="mothur_count_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="823c51e46535"/>
-    <repository owner="iuc" name="mothur_taxonomy_to_krona" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="76cd37c02c15"/>
-    <repository owner="iuc" name="mothur_get_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="521c407ebaf3"/>
-    <repository owner="iuc" name="mothur_deunique_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a048a180f89c"/>
-    <repository owner="iuc" name="mothur_otu_association" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="09bf5a8eeca0"/>
-    <repository owner="iuc" name="mothur_corr_axes" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6240b3cf0430"/>
-    <repository owner="iuc" name="mothur_get_group" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6cb5d94737fe"/>
-    <repository owner="iuc" name="mothur_remove_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c2cbd4e2a129"/>
-    <repository owner="iuc" name="mothur_chimera_pintail" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e9c031db9fa9"/>
-    <repository owner="iuc" name="mothur_cooccurrence" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="5085467ddcac"/>
-    <repository owner="iuc" name="mothur_make_contigs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="01fc4754891c"/>
-    <repository owner="iuc" name="mothur_chimera_check" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="fd59c5a179e2"/>
-    <repository owner="iuc" name="mothur_normalize_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c82312d3cce6"/>
-    <repository owner="iuc" name="mothur_summary_qual" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c0c110c170f7"/>
-    <repository owner="iuc" name="mothur_chimera_ccode" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="77ce5c7cb6b5"/>
-    <repository owner="iuc" name="mothur_pairwise_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="cc0db245361b"/>
-    <repository owner="iuc" name="mothur_heatmap_sim" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2eede66c17d4"/>
-    <repository owner="iuc" name="mothur_get_rabund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="f4cddf87f00a"/>
-    <repository owner="iuc" name="mothur_cluster_split" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b1180128da5a"/>
-    <repository owner="iuc" name="mothur_rarefaction_single" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="40bb615d00bd"/>
-    <repository owner="iuc" name="mothur_bin_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e9018f2da8b5"/>
-    <repository owner="iuc" name="mothur_nmds" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2da4040fe8f5"/>
-    <repository owner="iuc" name="mothur_metastats" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2867b16a791e"/>
-    <repository owner="iuc" name="mothur_indicator" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="235dd2bcbf0e"/>
-    <repository owner="iuc" name="mothur_split_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b6a4c1eedacd"/>
-    <repository owner="iuc" name="mothur_parsimony" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="f3a1855cb08f"/>
-    <repository owner="iuc" name="mothur_align_check" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="bff167ccb159"/>
-    <repository owner="iuc" name="mothur_shhh_flows" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e9c410bcf75d"/>
-    <repository owner="iuc" name="mothur_phylotype" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="abedc670214d"/>
-    <repository owner="iuc" name="mothur_get_otulist" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4df38a1ae3f0"/>
-    <repository owner="iuc" name="mothur_remove_dists" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="50860a2b7830"/>
-    <repository owner="iuc" name="mothur_get_communitytype" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8271a1a9ec7f"/>
-    <repository owner="iuc" name="mothur_rename_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e097b144606d"/>
-    <repository owner="iuc" name="mothur_merge_sfffiles" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="278012827935"/>
+    <repository owner="iuc" name="mothur_get_oturep" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="00ef7cce64d7"/>
+    <repository owner="iuc" name="mothur_dist_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8cee0e87bd08"/>
+    <repository owner="iuc" name="mothur_summary_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ece6ab750232"/>
+    <repository owner="iuc" name="mothur_make_lookup" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="09d11116135a"/>
+    <repository owner="iuc" name="mothur_get_otulist" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="729a6c27c9d7"/>
+    <repository owner="iuc" name="mothur_phylotype" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="122fd0477c2e"/>
+    <repository owner="iuc" name="mothur_get_coremicrobiome" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="cb94936553cc"/>
+    <repository owner="iuc" name="mothur_indicator" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="543a589ceb67"/>
+    <repository owner="iuc" name="mothur_summary_qual" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3197da09d2fc"/>
+    <repository owner="iuc" name="mothur_count_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="29d318f8fcdd"/>
+    <repository owner="iuc" name="mothur_filter_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="336d0a153c9d"/>
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 </repositories>
\ No newline at end of file