view repository_dependencies.xml @ 15:b9b84b5a59d7 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit dfdd4c590370ecb3a9806314d43eb5668e36a01a"
author iuc
date Thu, 21 Jan 2021 23:32:58 +0000
parents 3c9bd5039329
children
line wrap: on
line source

<?xml version="1.0" ?>
<repositories description="A suite of tools designed to bring the mothur project into Galaxy.">
    <repository owner="iuc" name="mothur_get_oturep" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="00ef7cce64d7"/>
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    <repository owner="iuc" name="mothur_summary_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ece6ab750232"/>
    <repository owner="iuc" name="mothur_make_lookup" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="09d11116135a"/>
    <repository owner="iuc" name="mothur_get_otulist" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="729a6c27c9d7"/>
    <repository owner="iuc" name="mothur_phylotype" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="122fd0477c2e"/>
    <repository owner="iuc" name="mothur_get_coremicrobiome" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="cb94936553cc"/>
    <repository owner="iuc" name="mothur_indicator" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="543a589ceb67"/>
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    <repository owner="iuc" name="mothur_taxonomy_to_krona" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="64bf1ad3e00f"/>
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    <repository owner="iuc" name="mothur_make_contigs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ebdde1484696"/>
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</repositories>