Mercurial > repos > iuc > suite_mothur
view repository_dependencies.xml @ 15:b9b84b5a59d7 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit dfdd4c590370ecb3a9806314d43eb5668e36a01a"
| author | iuc |
|---|---|
| date | Thu, 21 Jan 2021 23:32:58 +0000 |
| parents | 3c9bd5039329 |
| children |
line wrap: on
line source
<?xml version="1.0" ?> <repositories description="A suite of tools designed to bring the mothur project into Galaxy."> <repository owner="iuc" name="mothur_get_oturep" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="00ef7cce64d7"/> <repository owner="iuc" name="mothur_dist_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8cee0e87bd08"/> <repository owner="iuc" name="mothur_summary_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ece6ab750232"/> <repository owner="iuc" name="mothur_make_lookup" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="09d11116135a"/> <repository owner="iuc" name="mothur_get_otulist" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="729a6c27c9d7"/> <repository owner="iuc" name="mothur_phylotype" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="122fd0477c2e"/> <repository owner="iuc" name="mothur_get_coremicrobiome" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="cb94936553cc"/> <repository owner="iuc" name="mothur_indicator" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="543a589ceb67"/> <repository owner="iuc" name="mothur_summary_qual" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3197da09d2fc"/> <repository owner="iuc" name="mothur_count_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="29d318f8fcdd"/> <repository owner="iuc" name="mothur_filter_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="336d0a153c9d"/> <repository owner="iuc" name="mothur_collect_single" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="9a340ad6bdcb"/> <repository owner="iuc" name="mothur_lefse" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="050896590380"/> <repository owner="iuc" name="mothur_cluster_split" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e11c3ae8ef11"/> <repository owner="iuc" name="mothur_sort_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="836c995e70c5"/> <repository owner="iuc" name="mothur_otu_association" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="94dd49ba645a"/> <repository owner="iuc" name="mothur_venn" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a1c008c7bde8"/> <repository owner="iuc" name="mothur_chimera_uchime" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3e499295fb84"/> <repository owner="iuc" name="mothur_pcr_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="79f6dff338d5"/> <repository owner="iuc" name="mothur_pca" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="5d9f9e800e9c"/> <repository owner="iuc" name="mothur_get_sabund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="05e9baed8513"/> <repository owner="iuc" name="mothur_deunique_tree" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="f58c2e4cde53"/> <repository owner="iuc" name="mothur_unifrac_unweighted" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="54d61efa8aaa"/> <repository owner="iuc" name="mothur_consensus_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="974cc392877e"/> <repository owner="iuc" name="mothur_trim_flows" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e51642581e1d"/> <repository owner="iuc" name="mothur_filter_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="f6fb6f64bb88"/> <repository owner="iuc" name="mothur_make_fastq" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="9ac7af81b7b4"/> <repository owner="iuc" name="mothur_taxonomy_to_krona" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="64bf1ad3e00f"/> <repository owner="iuc" name="mothur_summary_tax" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2d11169e201a"/> <repository owner="iuc" name="mothur_align_check" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="fff50f092f53"/> <repository owner="iuc" name="mothur_get_rabund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6a5b1dae5ed8"/> <repository owner="iuc" name="mothur_remove_otulabels" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1d62a9c60428"/> <repository owner="iuc" name="mothur_dist_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="bfd7b2d180e3"/> <repository owner="iuc" name="mothur_remove_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ab787fb4ab6e"/> <repository owner="iuc" name="mothur_merge_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e0416999ce91"/> <repository owner="iuc" name="mothur_merge_sfffiles" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="73e97df3ffac"/> <repository owner="iuc" name="mothur_get_otulabels" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="49f339b042fe"/> <repository owner="iuc" name="mothur_remove_dists" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b1f636d5027c"/> <repository owner="iuc" name="mothur_chop_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="482685c38709"/> <repository owner="iuc" name="mothur_classify_tree" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c5aacafe50e4"/> <repository owner="iuc" name="mothur_heatmap_sim" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="19fb150d6096"/> <repository owner="iuc" name="mothur_summary_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b25270a0613d"/> <repository owner="iuc" name="mothur_list_otulabels" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ee764e59c375"/> <repository owner="iuc" name="mothur_split_abund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="74bd113640d9"/> <repository owner="iuc" name="mothur_create_database" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4913b06c5822"/> <repository owner="iuc" name="mothur_remove_lineage" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="962a5895015c"/> <repository owner="iuc" name="mothur_shhh_flows" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="08e036d52eda"/> <repository owner="iuc" name="mothur_degap_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="850eecb4d05c"/> <repository owner="iuc" name="mothur_homova" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="260261305880"/> <repository owner="iuc" name="mothur_list_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="14742f5cf3d2"/> <repository owner="iuc" name="mothur_get_relabund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e88068a362e5"/> <repository owner="iuc" name="mothur_sffinfo" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e0ecc25cf1ee"/> <repository owner="iuc" name="mothur_get_label" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a9d7797ee518"/> <repository owner="iuc" name="mothur_chimera_ccode" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="eaec395cb21b"/> <repository owner="iuc" name="mothur_corr_axes" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="5d03adf43c02"/> <repository owner="iuc" name="mothur_pre_cluster" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="24d1025860c0"/> <repository owner="iuc" name="mothur_amova" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="353fe428054e"/> <repository owner="iuc" name="mothur_otu_hierarchy" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="0bc103f19d6f"/> <repository owner="iuc" name="mothur_sub_sample" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a131d77a46d0"/> <repository owner="iuc" name="mothur_make_contigs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ebdde1484696"/> <repository owner="iuc" name="mothur_parse_list" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ba839f8a5223"/> <repository owner="iuc" name="mothur_get_lineage" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="827e52398193"/> <repository owner="iuc" name="mothur_unifrac_weighted" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="cbfd5a592111"/> <repository owner="iuc" name="mothur_sens_spec" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c7f9e2bb1f4b"/> <repository owner="iuc" name="mothur_chimera_slayer" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="cc3d0e3cd847"/> <repository owner="iuc" name="mothur_align_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6e0ea84e82eb"/> <repository owner="iuc" name="mothur_get_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b44da6ba41ff"/> <repository owner="iuc" name="mothur_parsimony" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8ed00ba4a3e0"/> <repository owner="iuc" name="mothur_heatmap_bin" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="60c0f0835cbb"/> <repository owner="iuc" name="mothur_get_otus" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8d8ff2801602"/> <repository owner="iuc" name="mothur_cluster_classic" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ed895d2d3c19"/> <repository owner="iuc" name="mothur_metastats" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="53444e5809a8"/> <repository owner="iuc" name="mothur_normalize_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2f6be7533267"/> <repository owner="iuc" name="mothur_make_group" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="7b58d9bb0f19"/> <repository owner="iuc" name="mothur_count_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6797f9328318"/> <repository owner="iuc" name="mothur_classify_otu" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="05d9a9ccc2b1"/> <repository owner="iuc" name="mothur_get_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="bf2e5aa03fa5"/> <repository owner="iuc" name="mothur_biom_info" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="01324c3f59bb"/> <repository owner="iuc" name="mothur_cluster_fragments" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="89094a38732f"/> <repository owner="iuc" name="mothur_chimera_vsearch" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="673280ed029b"/> <repository owner="iuc" name="mothur_deunique_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1753892e6e0e"/> <repository owner="iuc" name="mothur_remove_rare" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="f676a10ed077"/> <repository owner="iuc" name="mothur_merge_taxsummary" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="01c947e59611"/> <repository owner="iuc" name="mothur_nmds" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3e9cf6001091"/> <repository owner="iuc" name="mothur_shhh_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b3965f4da788"/> <repository owner="iuc" name="mothur_cooccurrence" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4edccb04c910"/> <repository owner="iuc" name="mothur_merge_files" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="0dc1da747cc1"/> <repository owner="iuc" name="mothur_reverse_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="913eb8386ff9"/> <repository owner="iuc" name="mothur_phylo_diversity" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="78ea0bd6cc13"/> <repository owner="iuc" name="mothur_chimera_perseus" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="51201178edfd"/> <repository owner="iuc" name="mothur_fastq_info" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="07a790bdd433"/> <repository owner="iuc" name="mothur_libshuff" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="db271b1965bd"/> <repository owner="iuc" name="mothur_get_communitytype" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="588e54f8a85e"/> <repository owner="iuc" name="mothur_screen_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="f507c270eb78"/> <repository owner="iuc" name="mothur_unique_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1177dd277927"/> <repository owner="iuc" name="mothur_make_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="36f5d1e31bf7"/> <repository owner="iuc" name="mothur_trim_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8c4958711551"/> <repository owner="iuc" name="mothur_rarefaction_single" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="943c69757b9c"/> <repository owner="iuc" name="mothur_summary_single" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c79e9d1d96c6"/> <repository owner="iuc" name="mothur_make_design" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="88f296f988c4"/> <repository owner="iuc" name="mothur_make_biom" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3b7951323ba8"/> <repository owner="iuc" name="mothur_collect_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="d5d6109c2b71"/> <repository owner="iuc" name="mothur_pcoa" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8ff19eafd71d"/> <repository owner="iuc" name="mothur_chimera_bellerophon" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="5073dac6ce1c"/> <repository owner="iuc" name="mothur_classify_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1dd541a6521f"/> <repository owner="iuc" name="mothur_anosim" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="bea6d6f10cb2"/> <repository owner="iuc" name="mothur_rename_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a49a3baea070"/> <repository owner="iuc" name="mothur_make_sra" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="02c9a67ce40d"/> <repository owner="iuc" name="mothur_remove_otus" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a932d29ea299"/> <repository owner="iuc" name="mothur_get_dists" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8c494c0dc6e2"/> <repository owner="iuc" name="mothur_get_group" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="487e9a9f07b1"/> <repository owner="iuc" name="mothur_merge_count" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="d7e3ae575b95"/> <repository owner="iuc" name="mothur_chimera_pintail" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3910cacf715e"/> <repository owner="iuc" name="mothur_mimarks_attributes" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="7892e5daa700"/> <repository owner="iuc" name="mothur_clearcut" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3b1e9cb24857"/> <repository owner="iuc" name="mothur_cluster" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="dd5e2ebf65f6"/> <repository owner="iuc" name="mothur_bin_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6da588629efd"/> <repository owner="iuc" name="mothur_tree_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1bf1de78ac9f"/> <repository owner="iuc" name="mothur_pairwise_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="5568bdb29abe"/> <repository owner="iuc" name="mothur_get_mimarkspackage" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a5536576a992"/> <repository owner="iuc" name="mothur_mantel" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="19f0af1ec3d3"/> <repository owner="iuc" name="mothur_primer_design" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ad989862826b"/> <repository owner="iuc" name="mothur_make_lefse" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="667df234be78"/> <repository owner="iuc" name="mothur_seq_error" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2714e215de97"/> <repository owner="iuc" name="mothur_rarefaction_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c51a69aade11"/> <repository owner="iuc" name="mothur_chimera_check" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="55e3d6d64cb5"/> <repository owner="iuc" name="mothur_split_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e38c0281d099"/> <repository owner="iuc" name="mothur_get_sharedseqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="07a432f3a263"/> <repository owner="iuc" name="mothur_remove_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="32eb568f384b"/> </repositories>
