Mercurial > repos > iuc > stringtie

comparison test-data/stringtie_out6.gtf @ 15:457d00d0005d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit b78c073ab258852730fc9af1cd4862d571459103
author iuc
date Tue, 04 Apr 2017 12:58:13 -0400
parents f70601406e0e
children d2d010512422
comparison
equal deleted inserted replaced
14:0f5a352b3f04 15:457d00d0005d
1 Gene ID Gene Name Reference Strand Start End Coverage FPKM TPM 1 # stringtie /tmp/tmpJfKWNy/files/000/dataset_22.dat -o /tmp/tmpJfKWNy/files/000/dataset_24.dat -p 1 -C /tmp/tmpJfKWNy/files/000/dataset_25.dat -G /tmp/tmpJfKWNy/files/000/dataset_23.dat -e -b ./special_de_output/sample1/
2 CUFF.1 - test_chromosome + 53 550 45.791946 3354721.250000 1000000.062500 2 # StringTie version 1.3.3
3 STRG.1 - test_chromosome + 53 550 45.791946 3354721.250000 1000000.062500 3 test_chromosome StringTie transcript 53 550 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; cov "45.795296"; FPKM "3354966.750000"; TPM "1000000.000000";
4 test_chromosome StringTie exon 53 250 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "1"; cov "49.777779";
5 test_chromosome StringTie exon 351 400 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "2"; cov "54.160004";
6 test_chromosome StringTie exon 501 550 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "3"; cov "21.660000";