Mercurial > repos > iuc > stacks_ustacks

comparison stacks_ustacks.xml @ 3:74a205bb4d66 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 9401451df4a985ef5686864eaadafa077ffc0877
author iuc
date Mon, 27 Feb 2017 05:42:50 -0500
parents f1099ae321eb
children 35a41f8e1c41
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2:f1099ae321eb 3:74a205bb4d66
11 11
12 mkdir stacks_inputs stacks_outputs 12 mkdir stacks_inputs stacks_outputs
13 13
14 && 14 &&
15 15
16 #if $sample.ext == "fastqsanger": 16 #if $sample.is_of_type('fastqsanger'):
17 #set $data_path = splitext($sample.element_identifier)[0] 17 #set $data_path = splitext($sample.element_identifier)[0]
18 #set $data_path = re.sub(r'\.1$', '', $data_path) 18 #set $data_path = re.sub(r'\.1$', '', $data_path)
19 #set $data_path = "stacks_inputs/" + $data_path + ".fq" 19 #set $data_path = "stacks_inputs/" + $data_path + ".fq"
20 #set inputype = "fastq" 20 #set inputype = "fastq"
21 #else: 21 #else: