Mercurial > repos > iuc > stacks_procrad

diff stacks_procrad.xml @ 9:390aab905bc2 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 74ee33c6e30744a6da8deb7116d431d80ee80edb
author iuc
date Fri, 07 Apr 2023 21:53:46 +0000
parents 93df40cf4d4b
children
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--- a/stacks_procrad.xml	Tue Mar 22 23:08:54 2022 +0000
+++ b/stacks_procrad.xml	Fri Apr 07 21:53:46 2023 +0000
@@ -1,9 +1,9 @@
 <tool id="stacks_procrad" name="Stacks: process radtags" version="@WRAPPER_VERSION@.0">
     <description>the Stacks demultiplexing script</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <command><![CDATA[
@@ -135,7 +135,7 @@
             <param name="score" type="integer" value="10" argument="-s" label="Set the score limit. If the average score within the sliding window drops below this value, the read is discarded (default 10)" />
             <param name="rescue" type="boolean" checked="false" truevalue="-r" falsevalue="" argument="-r" label="Rescue barcodes and RAD-Tags?"/>
             <param name="truncate" type="integer" value="" optional="True" argument="-t" label="Truncate final read length to this value" />
-            <param name="retain_header" type="boolean" checked="false" truevalue="--retain_header" falsevalue="" argument="--retain_header" label="Retain unmodified FASTQ headers in the output" />
+            <param type="boolean" checked="false" truevalue="--retain_header" falsevalue="" argument="--retain_header" label="Retain unmodified FASTQ headers in the output" />
         </section>
 
         <param name="outype" argument="-y" type="select" label="Output format" >