Mercurial > repos > iuc > stacks2_tsv2bam

diff stacks_tsv2bam.xml @ 1:e68237387d6a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
author iuc
date Mon, 30 Sep 2019 14:12:31 -0400
parents d2486dc8febe
children 4c875e995997
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--- a/stacks_tsv2bam.xml	Mon Jul 01 10:51:06 2019 -0400
+++ b/stacks_tsv2bam.xml	Mon Sep 30 14:12:31 2019 -0400
@@ -10,6 +10,10 @@
 
 mkdir stacks_inputs stacks_outputs &&
 
+#if $output_log
+    ln -s '$output_log' stacks_inputs/tsv2bam.log &&
+#end if
+
 @LINK_STACKS_INPUT@
 @LINK_CAT_INPUT@
 @LINK_MATCHES_INPUT@
@@ -43,9 +47,6 @@
 ## - move the additional log file
 2>&1
 
-#if $output_log
-    && mv stacks_inputs/tsv2bam.log $output_log
-#end if
 && mv stacks_inputs/*matches.bam stacks_outputs
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