Mercurial > repos > iuc > stacks2_refmap

comparison test-data/refmap/populations.log.distribs @ 0:524bd85b0bec draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
author iuc
date Mon, 01 Jul 2019 10:54:35 -0400
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-1:000000000000 0:524bd85b0bec
1 # Note: Individual distributions can be extracted using the `stacks-dist-extract` utility.
2 # e.g. `stacks-dist-extract populations.log.distribs dist_name`
3
4 BEGIN batch_progress
5 Contig_95: analyzed 1 loci; filtered 0 loci; 1 loci seen.
6 94 genomic sites, of which 0 were covered by multiple loci (0.0%).
7 Contig_1381: analyzed 2 loci; filtered 0 loci; 2 loci seen.
8 94 genomic sites, of which 94 were covered by multiple loci (100.0%).
9 Contig_2103: analyzed 2 loci; filtered 0 loci; 2 loci seen.
10 94 genomic sites, of which 94 were covered by multiple loci (100.0%).
11 Contig_2644: analyzed 2 loci; filtered 0 loci; 2 loci seen.
12 94 genomic sites, of which 94 were covered by multiple loci (100.0%).
13 Contig_3015: analyzed 2 loci; filtered 0 loci; 2 loci seen.
14 94 genomic sites, of which 94 were covered by multiple loci (100.0%).
15 Contig_3253: analyzed 2 loci; filtered 0 loci; 2 loci seen.
16 94 genomic sites, of which 94 were covered by multiple loci (100.0%).
17 Contig_3569: analyzed 2 loci; filtered 0 loci; 2 loci seen.
18 94 genomic sites, of which 94 were covered by multiple loci (100.0%).
19 END batch_progress
20
21 BEGIN samples_per_loc_prefilters
22 # Distribution of valid samples matched to a catalog locus prior to filtering.
23 n_samples n_loci
24 2 13
25 END samples_per_loc_prefilters
26
27 BEGIN missing_samples_per_loc_prefilters
28 # Distribution of missing samples for each catalog locus prior to filtering.
29 # Absent samples at locus Count
30 0 13
31 END missing_samples_per_loc_prefilters
32
33 BEGIN snps_per_loc_prefilters
34 # Distribution of the number of SNPs per catalog locus prior to filtering.
35 n_snps n_loci
36 0 10
37 2 3
38 END snps_per_loc_prefilters
39
40 BEGIN samples_per_loc_postfilters
41 # Distribution of valid samples matched to a catalog locus after filtering.
42 n_samples n_loci
43 2 13
44 END samples_per_loc_postfilters
45
46 BEGIN missing_samples_per_loc_postfilters
47 # Distribution of missing samples for each catalog locus after filtering.
48 # Absent samples at locus Count
49 0 13
50 END missing_samples_per_loc_postfilters
51
52 BEGIN snps_per_loc_postfilters
53 # Distribution of the number of SNPs per catalog locus (after filtering).
54 n_snps n_loci
55 0 10
56 2 3
57 END snps_per_loc_postfilters