Mercurial > repos > iuc > stacks2_refmap

comparison stacks_refmap.xml @ 3:3a6eacfb5ab6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 9a6c14bcb90c0b30c583294a993fac47504f4009"
author iuc
date Tue, 27 Apr 2021 09:22:04 +0000
parents 6e43ea81f086
children 969a9e0b90d7
comparison
equal deleted inserted replaced
2:6e43ea81f086 3:3a6eacfb5ab6
55 <param name="popmap" ftype="tabular" value="denovo_map/popmap_cstacks.tsv"/> 55 <param name="popmap" ftype="tabular" value="denovo_map/popmap_cstacks.tsv"/>
56 <param name="add_log" value="yes"/> 56 <param name="add_log" value="yes"/>
57 <output ftype="txt" name="output_log"><assert_contents><has_text text="ref_map.pl is done."/></assert_contents></output> 57 <output ftype="txt" name="output_log"><assert_contents><has_text text="ref_map.pl is done."/></assert_contents></output>
58 <output_collection name="gstacks_out" type="list" count="2"> 58 <output_collection name="gstacks_out" type="list" count="2">
59 <element name="catalog.calls.vcf" file="refmap/catalog.calls.vcf" ftype="vcf" lines_diff="4"/> 59 <element name="catalog.calls.vcf" file="refmap/catalog.calls.vcf" ftype="vcf" lines_diff="4"/>
60 <element name="catalog.fa.gz" file="refmap/catalog.fa.gz" ftype="fasta.gz" compare="sim_size" delta_frac="0.01"/> 60 <element name="catalog.fa.gz" file="refmap/catalog.fa.gz" ftype="fasta.gz" compare="diff"/>
61 </output_collection> 61 </output_collection>
62 <output ftype="tabular" name="out_haplotypes" value="refmap/populations.haplotypes.tsv"/> 62 <output ftype="tabular" name="out_haplotypes" value="refmap/populations.haplotypes.tsv"/>
63 <output ftype="tabular" name="out_hapstats" value="refmap/populations.hapstats.tsv"/> 63 <output ftype="tabular" name="out_hapstats" value="refmap/populations.hapstats.tsv"/>
64 <output ftype="txt" name="out_populations_log_distribs" value="refmap/populations.log.distribs"/> 64 <output ftype="txt" name="out_populations_log_distribs" value="refmap/populations.log.distribs"/>
65 <output ftype="tabular" name="out_sumstats_sum" value="refmap/populations.sumstats_summary.tsv"/> 65 <output ftype="tabular" name="out_sumstats_sum" value="refmap/populations.sumstats_summary.tsv"/>