Mercurial > repos > iuc > stacks2_kmerfilter

comparison stacks_kmerfilter.xml @ 5:39c1907c0f3c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author iuc
date Thu, 14 Apr 2022 09:13:22 +0000
parents 9a119e97b272
children
comparison
equal deleted inserted replaced
4:27e6b7a11b3d 5:39c1907c0f3c
1 <tool id="stacks2_kmerfilter" name="Stacks2: kmer filter" profile="@PROFILE@" version="@STACKS_VERSION@+galaxy@WRAPPER_VERSION@"> 1 <tool id="stacks2_kmerfilter" name="Stacks2: kmer filter" profile="@PROFILE@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>Identify PCR clones</description> 2 <description>Identify PCR clones</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
79 #end if 79 #end if
80 #end if 80 #end if
81 #end if 81 #end if
82 ]]></command> 82 ]]></command>
83 <inputs> 83 <inputs>
84 <expand macro="fastq_input_bc"/> 84 <expand macro="fastq_input"/>
85 <param name="capture" type="boolean" checked="false" truevalue="-D" falsevalue="" argument="-D" label="Capture discarded reads to a file"/> 85 <param name="capture" type="boolean" checked="false" truevalue="-D" falsevalue="" argument="-D" label="Capture discarded reads to a file"/>
86 <section name="options_filtering" title="Filtering options" expanded="False"> 86 <section name="options_filtering" title="Filtering options" expanded="False">
87 <param argument="--rare" type="boolean" checked="false" truevalue="--rare" falsevalue="" label="Turn on filtering based on rare k-mers"/> 87 <param argument="--rare" type="boolean" checked="false" truevalue="--rare" falsevalue="" label="Turn on filtering based on rare k-mers"/>
88 <param argument="--abundant" type="boolean" checked="false" truevalue="--abundant" falsevalue="" label="Turn on filtering based on abundant k-mers"/> 88 <param argument="--abundant" type="boolean" checked="false" truevalue="--abundant" falsevalue="" label="Turn on filtering based on abundant k-mers"/>
89 <param argument="--k_len" type="integer" value="15" label="K-mer size"/> 89 <param argument="--k_len" type="integer" value="15" label="K-mer size"/>