Mercurial > repos > iuc > stacks2_cstacks

diff stacks_cstacks.xml @ 6:b4bee1aabdc0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 2f4c9bfc48d63075ae18a1687e8d01ffea509084
author iuc
date Wed, 11 May 2022 06:30:20 +0000
parents c1452c725e7d
children
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--- a/stacks_cstacks.xml	Thu Apr 14 09:09:20 2022 +0000
+++ b/stacks_cstacks.xml	Wed May 11 06:30:20 2022 +0000
@@ -110,9 +110,9 @@
             <param name="add_log" value="yes"/>
             <output name="output_log"><assert_contents><has_text text="done."/></assert_contents></output>
             <output_collection name="catalog" type="list">
-                <element name="catalog.alleles"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element>
-                <element name="catalog.snps"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element>
-                <element name="catalog.tags"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element>
+                <expand macro="test_element_stacks_completed" element_name="catalog.alleles" />
+                <expand macro="test_element_stacks_completed" element_name="catalog.snps" />
+                <expand macro="test_element_stacks_completed" element_name="catalog.tags" />
             </output_collection>
         </test>
         <!-- test w non default options (wo gapped, because tested already in ustacks) -->
@@ -139,9 +139,9 @@
             <param name="add_log" value="no"/>
             <assert_stderr><has_text text="done."/></assert_stderr>
             <output_collection name="catalog" type="list">
-                <element name="catalog.alleles"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element>
-                <element name="catalog.snps"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element>
-                <element name="catalog.tags"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element>
+                <expand macro="test_element_stacks_completed" element_name="catalog.alleles" />
+                <expand macro="test_element_stacks_completed" element_name="catalog.snps" />
+                <expand macro="test_element_stacks_completed" element_name="catalog.tags" />
             </output_collection>
         </test>
     </tests>