Mercurial > repos > iuc > stacks2_cstacks

diff test-data/gentest.sh @ 2:7b5509de8421 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"
author iuc
date Wed, 15 Jul 2020 21:13:22 +0000
parents a034f8937db6
children 23b64cd53784
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--- a/test-data/gentest.sh	Mon Sep 30 14:08:37 2019 -0400
+++ b/test-data/gentest.sh	Wed Jul 15 21:13:22 2020 +0000
@@ -1,7 +1,11 @@
 #!/usr/bin/env bash
+eval "$(conda shell.bash hook)"
+conda activate __stacks@2.52
+
+
+
 
 mkdir stacks_outputs
-
 denovo_map.pl --samples demultiplexed --popmap denovo_map/popmap_cstacks.tsv -o stacks_outputs --paired  && 
 gunzip -c stacks_outputs/catalog.calls > stacks_outputs/catalog.calls.vcf
 rm stacks_outputs/catalog.calls