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comparison sam_dump.xml @ 22:fe99dc15b7af draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 21f935ba50d3e4b455246c681e54d5c57c67032f"
author iuc
date Fri, 03 Sep 2021 16:17:17 +0000
parents b50c21c6e6bb
children 6669afa92957
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21:9828888fc245 22:fe99dc15b7af
1 <tool id="sam_dump" name="Download and Extract Reads in BAM" version="@VERSION@+galaxy0" profile="18.01"> 1 <tool id="sam_dump" name="Download and Extract Reads in BAM" version="@VERSION@+galaxy0" profile="18.01">
2 <description>format from NCBI SRA</description> 2 <description>format from NCBI SRA</description>
3 <expand macro="bio_tools"/>
3 <macros> 4 <macros>
4 <import>sra_macros.xml</import> 5 <import>sra_macros.xml</import>
5 </macros> 6 </macros>
6 <expand macro="requirements"> 7 <expand macro="requirements">
7 <requirement type="package" version="1.10">samtools</requirement> 8 <requirement type="package" version="1.10">samtools</requirement>
165 @ACCESSION_LIST_HOWTO@ 166 @ACCESSION_LIST_HOWTO@
166 167
167 ----- 168 -----
168 169
169 .. _BAM: https://samtools.github.io/hts-specs/SAMv1.pdf 170 .. _BAM: https://samtools.github.io/hts-specs/SAMv1.pdf
170 .. _sam-dump: https://ncbi.github.io/sra-tools/sam-dump.html 171 .. _sam-dump: https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=toolkit_doc&f=sam-dump
171 .. _collection: https://galaxyproject.org/tutorials/collections/ 172 .. _collection: https://galaxyproject.org/tutorials/collections/
172 .. _link: https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies 173 .. _link: https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies
173 174
174 @SRATOOLS_ATTRRIBUTION@ 175 @SRATOOLS_ATTRRIBUTION@
175 ]]></help> 176 ]]></help>