Mercurial > repos > iuc > squirrel_phylo

diff squirrel-phylo.xml @ 3:cb39e40802ef draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/squirrel commit 68ea06281ba78b828b8d1947745161697dc0fbc5
author iuc
date Tue, 10 Jun 2025 13:32:25 +0000
parents 153c1ee28c48
children
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--- a/squirrel-phylo.xml	Tue Mar 11 09:13:59 2025 +0000
+++ b/squirrel-phylo.xml	Tue Jun 10 13:32:25 2025 +0000
@@ -130,7 +130,7 @@
 
     <outputs>
       <!-- standard outputs-->
-      <data name="tree" format="newick" label="${tool.name} - phylogenetic tree" />
+      <data name="tree" format="nexus" label="${tool.name} - phylogenetic tree" />
       <data name="alignment" format="fasta" label="${tool.name} - aligned sequences" />
       <!-- apobec3 outputs-->
       <data name="svg" format="svg" label="${tool.name} - phylotree svg image">
@@ -139,10 +139,10 @@
       <data name="png" format="png" label="${tool.name} - phylotree png image"> 
         <filter>apobec3</filter>
       </data>
-      <data name="aa_recon" format="png" label="${tool.name} - aa mutations ancestral reconstruction">
+      <data name="aa_recon" format="csv" label="${tool.name} - aa mutations ancestral reconstruction">
         <filter>apobec3</filter>
       </data>
-      <data name="branch_snps" format="png" label="${tool.name} - apobec3 nt mutations">
+      <data name="branch_snps" format="csv" label="${tool.name} - apobec3 nt mutations">
         <filter>apobec3</filter>
       </data>
     </outputs>