Mercurial > repos > iuc > sqlite_to_tabular

comparison sqlite_to_tabular.xml @ 1:89d898454f1e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
author iuc
date Fri, 18 Aug 2017 16:47:20 -0400
parents c866ec050312
children 27625fe9f33b
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0:c866ec050312 1:89d898454f1e
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="sqlite_to_tabular" name="SQLite to tabular" version="1.0.0"> 2 <tool id="sqlite_to_tabular" name="SQLite to tabular" version="2.0.0">
3 <description>for SQL query</description> 3 <description>for SQL query</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
8 8
9 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
10 python '$__tool_directory__/sqlite_to_tabular.py' 10 python '$__tool_directory__/sqlite_to_tabular.py'
11 --sqlitedb='$sqlitedb' 11 --sqlitedb='$sqlitedb'
12 --query_file='$query_file' 12 --query_file='$query_file'
13 $no_header 13 @RESULT_HEADER@
14 --output='$query_results' 14 --output='$query_results'
15 ]]></command> 15 ]]></command>
16 <configfiles> 16 <configfiles>
17 <configfile name="query_file"> 17 <configfile name="query_file">
18 $sqlquery 18 $sqlquery
22 <param name="sqlitedb" type="data" format="sqlite" label="SQLite Database"/> 22 <param name="sqlitedb" type="data" format="sqlite" label="SQLite Database"/>
23 <param name="sqlquery" type="text" area="True" size="120x20" label="SQL query"> 23 <param name="sqlquery" type="text" area="True" size="120x20" label="SQL query">
24 <validator type="regex">(?ims)^\s*SELECT\s.*\sFROM\s.*$</validator> 24 <validator type="regex">(?ims)^\s*SELECT\s.*\sFROM\s.*$</validator>
25 <sanitizer sanitize="False"/> 25 <sanitizer sanitize="False"/>
26 </param> 26 </param>
27 <param name="no_header" type="boolean" truevalue="-n" falsevalue="" checked="False" label="Omit column headers"/> 27 <expand macro="result_results_header_line" />
28 </inputs> 28 </inputs>
29 <outputs> 29 <outputs>
30 <data name="query_results" format="tabular" /> 30 <data name="query_results" format="tabular" />
31 </outputs> 31 </outputs>
32 <tests> 32 <tests>