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annotate run_tests.sh @ 5:9e54ad0299d0 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 8436aab757c3f41423f3ba76961c2f599f97fc40
author iuc
date Wed, 10 May 2023 18:51:53 +0000
parents 5716979b9d34
children
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5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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1 #!/usr/bin/env bash
5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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4 INPUT_PATH='./test-data/test-movie.tif'
5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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5 SCRIPT_PATH='.'
5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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7 # set to galaxy defaults!!
5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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8 python3 $SCRIPT_PATH/spyboat_cli.py --input_path $INPUT_PATH --phase_out phase_out.tif --period_out period_out.tif --dt 1 --Tmin 20 --Tmax 30 --nT 150 --ncpu 6 --Tcutoff 40
5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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10 # additional paramters
5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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11 #--masking static --mask_frame 10 --mask_thresh 300 --rescale 80 --gauss_sigma 1
5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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13 printf "\n"
5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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14 # printf "\nError examples:\n"
5716979b9d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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