Mercurial > repos > iuc > spades_coronaspades

comparison write_tsv_script.py @ 6:af359cc054ca draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit a09a5e3ee3c76550526f082b97de8da75181a1dd
author iuc
date Wed, 13 Jul 2022 07:39:24 +0000
parents 500d31cc9872
children
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5:13b50fb1fc81 6:af359cc054ca
1 #!/usr/bin/env python 1 #!/usr/bin/env python
2 2
3 import re 3 import re
4 import sys 4 import sys
5 5
6 search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*).*\$" 6 search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*)(.*\$)?"
7 7
8 replace_str = r"\1_\2\t\3\t\4" 8 replace_str = r"\1_\2\t\3\t\4"
9 9
10 cmd = re.compile(search_str) 10 cmd = re.compile(search_str)
11 11