Mercurial > repos > iuc > sonneityping

annotate test-data/SRR6114360.json @ 0:3a328b3aeb65 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
author iuc
date Thu, 16 Sep 2021 06:51:49 +0000
parents
children
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0
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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diff changeset
1 {
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2 "SRR6114360": {
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3 "susceptibility": {
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4 "quinolones": {
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5 "predict": "S"
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6 }
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7 },
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8 "phylogenetics": {
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9 "phylo_group": {
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10 "Ecoli_Shigella": {
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11 "percent_coverage": 100.0,
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14 },
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15 "sub_complex": {
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16 "Unknown": {
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19 }
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20 },
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21 "species": {
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22 "Shigella_sonnei": {
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31 "calls_summary": {
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207 "kmer": 21,
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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208 "probe_sets": [
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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209 "/home/eric/miniconda3/lib/python3.8/site-packages/mykrobe/data/sonnei/sonnei.lineage.20210201.probes.fa.gz",
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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210 "/home/eric/miniconda3/lib/python3.8/site-packages/mykrobe/data/sonnei/sonnei.mlst.20201010.sonnei.fa.gz",
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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211 "/home/eric/miniconda3/lib/python3.8/site-packages/mykrobe/data/sonnei/sonnei.probe.uidA.20201010.fa.gz",
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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212 "/home/eric/miniconda3/lib/python3.8/site-packages/mykrobe/data/sonnei/sonnei.qrdr.20201010.probes.fa.gz"
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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213 ],
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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214 "files": [
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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215 "SRR6114360_1"
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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216 ],
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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217 "version": {
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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218 "mykrobe-predictor": "v0.10.0",
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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219 "mykrobe-atlas": "v0.10.0"
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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220 },
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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221 "genotype_model": "kmer_count"
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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222 }
3a328b3aeb65 "planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
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223 }