Mercurial > repos > iuc > snpsift

diff snpSift_vartype.xml @ 11:b884686a80dc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 344140b8df53b8b7024618bb04594607a045c03a
author iuc
date Mon, 04 May 2015 22:37:06 -0400
parents f0faaa4d6ee5
children ed810da439cc
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line diff
--- a/snpSift_vartype.xml	Wed Apr 29 11:55:50 2015 -0400
+++ b/snpSift_vartype.xml	Mon May 04 22:37:06 2015 -0400
@@ -1,9 +1,10 @@
 <tool id="snpsift_vartype" name="SnpSift Variant Type" version="4.0.0">
     <description>Annotate with variant type</description>
-    <expand macro="requirements" />
     <macros>
         <import>snpSift_macros.xml</import>
     </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
     <command>
         java -jar \$SNPEFF_JAR_PATH/SnpSift.jar varType $input 2&gt; $log &gt; $output
     </command>
@@ -14,7 +15,6 @@
         <data format="vcf" name="output" label="${tool.name} on ${on_string}: VCF" />
         <data format="txt" name="log" label="${tool.name} on ${on_string}: log" />
     </outputs>
-    <expand macro="stdio" />
     <tests>
     </tests>
     <help>