Mercurial > repos > iuc > snpsift

annotate snpSift_macros.xml @ 20:f90f08ed9810 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit df8a21df77acffe40c0bc0fe0409ca1b529cd7fc"
author iuc
date Sat, 11 Sep 2021 07:17:20 +0000
parents ede8954f5c82
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1 <macros>
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2 <xml name="requirements">
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3 <requirements>
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4 <requirement type="package" version="4.3.1t">snpsift</requirement>
ede8954f5c82 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
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5 <!--Coreutils are required to make readlink work across platforms. Previous version did not work on MacOS-->
ede8954f5c82 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
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6 <requirement type="package" version="8.25">coreutils</requirement>
ede8954f5c82 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
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7 <!--PERL is required to make SnpSift helper scripts run-->
ede8954f5c82 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
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8 <requirement type="package" version="5.26">perl</requirement>
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9 </requirements>
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10 </xml>
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11 <xml name="stdio">
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12 <stdio>
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13 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
8bd645802765 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit fbc18d9128669e461e76ed13307ee88dd774afa5
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14 <exit_code range="1:" level="fatal" description="Error" />
8bd645802765 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit fbc18d9128669e461e76ed13307ee88dd774afa5
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15 </stdio>
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16 </xml>
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17 <token name="@CONDA_SNPSIFT_JAR_PATH@">if [ -z "\$SNPSIFT_JAR_PATH" ]; then export SNPSIFT_JAR_PATH=\$(dirname \$(readlink -e \$(which SnpSift))); fi</token>
8bd645802765 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit fbc18d9128669e461e76ed13307ee88dd774afa5
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18 <xml name="version_command">
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19 <version_command><![CDATA[
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20 SnpSift dbnsfp 2>&1|head -n 1
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21 ]]></version_command>
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22 </xml>
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23 <token name="@WRAPPER_VERSION@">4.3+t</token>
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24 <token name="@EXTERNAL_DOCUMENTATION@">
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25 For details about this tool, please go to:
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27 - http://snpeff.sourceforge.net/SnpEff_manual.html
8bd645802765 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit fbc18d9128669e461e76ed13307ee88dd774afa5
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28 </token>
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29 <xml name="citations">
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30 <citations>
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31 <citation type="doi">10.3389/fgene.2012.00035</citation>
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32 <yield />
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33 </citations>
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34 </xml>
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35 </macros>