Mercurial > repos > iuc > snpeff
diff snpEff_macros.xml @ 33:94653948fdb9 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit e4cbbb48006ac767c69efe53eab2a63306124bb5
| author | iuc |
|---|---|
| date | Sat, 04 Oct 2025 17:00:46 +0000 |
| parents | ebe9fd7e5bd1 |
| children |
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--- a/snpEff_macros.xml Mon Nov 18 22:15:18 2024 +0000 +++ b/snpEff_macros.xml Sat Oct 04 17:00:46 2025 +0000 @@ -1,7 +1,19 @@ <macros> + <!-- TOKENS TO BE UPDATED --> <token name="@TOOL_VERSION@">5.2</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@SNPEFF_VERSION@">SnpEff5.2</token> + <!-- SnpEff versions are usually backwards compatible with a few older database versions. + The authoritative place to look up the compatibility scheme is DATABASE_COMPATIBLE_VERSIONS in Config.java of the upstream code. + Currently this would be: + https://github.com/pcingola/SnpEff/blob/master/src/main/java/org/snpeff/snpEffect/Config.java#L37-L52 + + The three following tokens define the list of compatible DB versions for the wrapper (for input validation), a human-readable string (for parameter help/labels) and a regex of the same versions (for filtering of data table records). --> + <token name="@COMPATIBLE_DB_VERSIONS@">['SnpEff5.0', 'SnpEff5.1', 'SnpEff5.2']</token> + <token name="@COMPATIBLE_DB_VERSIONS_STRING@">SnpEff 5.0 - 5.2</token> + <token name="@COMPATIBLE_DB_VERSIONS_REGEX@"><![CDATA[^SnpEff5\.[0-2]$]]></token> + <!-- End of TOKENS TO BE UPDATED --> + <xml name="requirement"> <requirement type="package" version="@TOOL_VERSION@">snpeff</requirement> <yield/>
