Mercurial > repos > iuc > snpeff
diff snpEff_create_db.xml @ 33:94653948fdb9 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit e4cbbb48006ac767c69efe53eab2a63306124bb5
| author | iuc |
|---|---|
| date | Sat, 04 Oct 2025 17:00:46 +0000 |
| parents | ebe9fd7e5bd1 |
| children |
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--- a/snpEff_create_db.xml Mon Nov 18 22:15:18 2024 +0000 +++ b/snpEff_create_db.xml Sat Oct 04 17:00:46 2025 +0000 @@ -126,8 +126,10 @@ <tests> <test expect_num_outputs="2"> <param name="genome_version" value="pBR322"/> - <param name="input_type_selector" value="gb"/> - <param name="input" value="pBR322.gbk" /> + <conditional name="input_type"> + <param name="input_type_selector" value="gb"/> + <param name="input" value="pBR322.gbk" /> + </conditional> <output name="snpeff_output"> <assert_contents> <has_text text="pBR322" /> @@ -137,8 +139,10 @@ </test> <test expect_num_outputs="2"> <param name="genome_version" value="pBR322"/> - <param name="input_type_selector" value="gb"/> - <param name="input" value="pBR322.gbk.gz" /> + <conditional name="input_type"> + <param name="input_type_selector" value="gb"/> + <param name="input" value="pBR322.gbk.gz" /> + </conditional> <output name="snpeff_output"> <assert_contents> <has_text text="pBR322" /> @@ -148,10 +152,14 @@ </test> <test expect_num_outputs="1"> <param name="genome_version" value="pBR322"/> - <param name="input_type_selector" value="gff"/> - <param name="reference_source_selector" value="history"/> - <param name="input_fasta" value="pBR322_test2.fna" /> - <param name="input" value="pBR322.gff3"/> + <conditional name="input_type"> + <param name="input_type_selector" value="gff"/> + <param name="input" value="pBR322.gff3"/> + <conditional name="reference_source"> + <param name="reference_source_selector" value="history"/> + <param name="input_fasta" value="pBR322_test2.fna" /> + </conditional> + </conditional> <output name="snpeff_output"> <assert_contents> <has_text text="pBR322" /> @@ -160,10 +168,14 @@ </test> <test expect_num_outputs="1"> <param name="genome_version" value="pBR322"/> - <param name="input_type_selector" value="gff"/> - <param name="reference_source_selector" value="history"/> - <param name="input_fasta" value="pBR322_test2.fna.gz" /> - <param name="input" value="pBR322.gff3"/> + <conditional name="input_type"> + <param name="input_type_selector" value="gff"/> + <param name="input" value="pBR322.gff3"/> + <conditional name="reference_source"> + <param name="reference_source_selector" value="history"/> + <param name="input_fasta" value="pBR322_test2.fna.gz" /> + </conditional> + </conditional> <output name="snpeff_output"> <assert_contents> <has_text text="pBR322" /> @@ -172,10 +184,14 @@ </test> <test expect_num_outputs="1"> <param name="genome_version" value="Saccharomyces_mito"/> - <param name="input_type_selector" value="gtf"/> - <param name="reference_source_selector" value="history"/> - <param name="input_fasta" value="Saccharomyces_mito.fa.gz" /> - <param name="input" value="Saccharomyces_mito.gtf" /> + <conditional name="input_type"> + <param name="input_type_selector" value="gtf"/> + <param name="input" value="Saccharomyces_mito.gtf" /> + <conditional name="reference_source"> + <param name="reference_source_selector" value="history"/> + <param name="input_fasta" value="Saccharomyces_mito.fa.gz" /> + </conditional> + </conditional> <output name="snpeff_output"> <assert_contents> <has_text text="Saccharomyces_mito" />