Mercurial > repos > iuc > snpeff

diff snpeff_get_chr_names.xml @ 27:c6422110bc0b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 67da1a478db26ad45f36a673218d526f8962d72f"
author iuc
date Sun, 19 Jan 2020 14:43:20 +0000
parents 4c790901c495
children 0c8a8cd9dd5b
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line diff
--- a/snpeff_get_chr_names.xml	Fri Oct 18 06:11:53 2019 -0400
+++ b/snpeff_get_chr_names.xml	Sun Jan 19 14:43:20 2020 +0000
@@ -1,14 +1,16 @@
-<tool id="snpEff_get_chr_names" name="SnpEff chromosome-info:" version="@WRAPPER_VERSION@.galaxy1">
+<tool id="snpEff_get_chr_names" name="SnpEff chromosome-info:" version="@WRAPPER_VERSION@.galaxy2">
     <description>list chromosome names/lengths</description>
     <macros>
         <import>snpEff_macros.xml</import>
     </macros>
     <requirements>
-        <expand macro="requirement" />
+        <expand macro="requirement">
+            <requirement type="package" version="5.0.1">gawk</requirement>
+        </expand>
     </requirements>
     <expand macro="stdio" />
     <expand macro="version_command" />
-    <command><![CDATA[
+    <command detect_errors="exit_code"><![CDATA[
       snpEff @JAVA_OPTIONS@ dump
       #if $snpDb.genomeSrc == 'cached':
         -dataDir ${snpDb.genomeVersion.fields.path}