Mercurial > repos > iuc > snpeff

diff snpEff_download.xml @ 5:92b80578fa22 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 344140b8df53b8b7024618bb04594607a045c03a
author iuc
date Mon, 04 May 2015 22:37:25 -0400
parents 114f423f99c0
children 9ec1cb6f760d
line wrap: on
line diff
--- a/snpEff_download.xml	Wed Apr 29 11:56:04 2015 -0400
+++ b/snpEff_download.xml	Mon May 04 22:37:25 2015 -0400
@@ -1,12 +1,13 @@
 <tool id="snpEff_download" name="SnpEff Download" version="@WRAPPER_VERSION@.0">
     <description>Download a new database</description>
-    <expand macro="requirements" />
     <macros>
         <import>snpEff_macros.xml</import>
     </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
     <command>
 <![CDATA[
-    java -jar \$SNPEFF_JAR_PATH/snpEff.jar download -c \$SNPEFF_JAR_PATH/snpEff.config -dataDir $snpeff_db.files_path -v $genome_version 
+    java -jar \$SNPEFF_JAR_PATH/snpEff.jar download -c \$SNPEFF_JAR_PATH/snpEff.config -dataDir $snpeff_db.files_path -v $genome_version
 ]]>
     </command>
     <inputs>
@@ -18,7 +19,6 @@
     <outputs>
         <data format="snpeffdb" name="snpeff_db" label="${tool.name} @SNPEFF_VERSION@ ${genome_version}" />
     </outputs>
-    <expand macro="stdio" />
     <help>
 
 @EXTERNAL_DOCUMENTATION@