Mercurial > repos > iuc > snpeff

diff snpEff.xml @ 24:4c790901c495 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit fafb197acfe233d18a542e8c567943faf9abc3aa
author iuc
date Fri, 25 Jan 2019 12:29:21 -0500
parents 9939612ba3cf
children 0c8a8cd9dd5b
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line diff
--- a/snpEff.xml	Wed Sep 12 14:35:47 2018 -0400
+++ b/snpEff.xml	Fri Jan 25 12:29:21 2019 -0500
@@ -83,6 +83,7 @@
             -configOption '${snpDb.snpeff_db.metadata.genome_version}'.codonTable='${snpDb.codon_table}'
             '${snpDb.snpeff_db.metadata.genome_version}'
         #else
+          -dataDir "\$PWD/temp"
           -download
           '$snpDb.genome_version'
         #end if
@@ -170,7 +171,7 @@
                 </section>
             </when>
             <when value="named">
-                <param name="genome_version" type="text" value="" label="Snpff Genome Version Name (e.g. GRCh38.76)">
+                <param name="genome_version" type="text" value="" label="Snpff Genome Version Name (e.g. GRCh38.86)">
                     <help>@SNPEFF_DATABASE_URL@</help>
                     <validator type="empty_field" message="A genome version name is required" />
                 </param>