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comparison snpEff_macros.xml @ 33:94653948fdb9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit e4cbbb48006ac767c69efe53eab2a63306124bb5
author iuc
date Sat, 04 Oct 2025 17:00:46 +0000
parents ebe9fd7e5bd1
children
comparison
equal deleted inserted replaced
32:ebe9fd7e5bd1 33:94653948fdb9
1 <macros> 1 <macros>
2 <!-- TOKENS TO BE UPDATED -->
2 <token name="@TOOL_VERSION@">5.2</token> 3 <token name="@TOOL_VERSION@">5.2</token>
3 <token name="@VERSION_SUFFIX@">0</token> 4 <token name="@VERSION_SUFFIX@">1</token>
4 <token name="@SNPEFF_VERSION@">SnpEff5.2</token> 5 <token name="@SNPEFF_VERSION@">SnpEff5.2</token>
6 <!-- SnpEff versions are usually backwards compatible with a few older database versions.
7 The authoritative place to look up the compatibility scheme is DATABASE_COMPATIBLE_VERSIONS in Config.java of the upstream code.
8 Currently this would be:
9 https://github.com/pcingola/SnpEff/blob/master/src/main/java/org/snpeff/snpEffect/Config.java#L37-L52
10
11 The three following tokens define the list of compatible DB versions for the wrapper (for input validation), a human-readable string (for parameter help/labels) and a regex of the same versions (for filtering of data table records). -->
12 <token name="@COMPATIBLE_DB_VERSIONS@">['SnpEff5.0', 'SnpEff5.1', 'SnpEff5.2']</token>
13 <token name="@COMPATIBLE_DB_VERSIONS_STRING@">SnpEff 5.0 - 5.2</token>
14 <token name="@COMPATIBLE_DB_VERSIONS_REGEX@"><![CDATA[^SnpEff5\.[0-2]$]]></token>
15 <!-- End of TOKENS TO BE UPDATED -->
16
5 <xml name="requirement"> 17 <xml name="requirement">
6 <requirement type="package" version="@TOOL_VERSION@">snpeff</requirement> 18 <requirement type="package" version="@TOOL_VERSION@">snpeff</requirement>
7 <yield/> 19 <yield/>
8 </xml> 20 </xml>
9 <xml name="stdio"> 21 <xml name="stdio">