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comparison snpEff.xml @ 12:bbbab2d84e3b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 9d2052269bfbca81a5f9cd10c3153e611358a329
author iuc
date Tue, 24 Oct 2017 07:27:02 -0400
parents 81fba81425a4
children 7b299e699755
comparison
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11:81fba81425a4 12:bbbab2d84e3b
216 <option value="-noLof">Do not add LOF and NMD annotations</option> 216 <option value="-noLof">Do not add LOF and NMD annotations</option>
217 <option value="-noMotif">Disable motif annotations</option> 217 <option value="-noMotif">Disable motif annotations</option>
218 <option value="-noNextProt">Disable NextProt annotations</option> 218 <option value="-noNextProt">Disable NextProt annotations</option>
219 <option value="-noInteraction">Disable interaction annotations</option> 219 <option value="-noInteraction">Disable interaction annotations</option>
220 <option value="-cancer">Perform 'cancer' comparisons (somatic vs. germline)</option> 220 <option value="-cancer">Perform 'cancer' comparisons (somatic vs. germline)</option>
221 <!-- onlyReg option results in ifrequent exceptions with version 4.3k 221 <!-- onlyReg option results in frequent exceptions with version 4.3k
222 <option value="-onlyReg">Only use regulation tracks</option> 222 <option value="-onlyReg">Only use regulation tracks</option>
223 --> 223 -->
224 </param> 224 </param>
225 <!-- -cancerSamples <file> : Two column TXT file defining 'oringinal \t derived' samples. --> 225 <!-- -cancerSamples <file> : Two column TXT file defining 'oringinal \t derived' samples. -->
226 <param name="intervals" type="data" format="bed" optional="true" label="Use custom interval file for annotation"/> 226 <param name="intervals" type="data" format="bed" optional="true" label="Use custom interval file for annotation"/>