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comparison snpEff_macros.xml @ 29:030fe29d4c47 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit a4c17efb8ec4b3a315766f5b5602effa275fade3
author iuc
date Wed, 03 Aug 2022 16:33:10 +0000
parents b1b327f475ac
children b7029a54f73e
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28:b1b327f475ac 29:030fe29d4c47
16 </xml> 16 </xml>
17 <token name="@WRAPPER_VERSION@">4.3+T</token> 17 <token name="@WRAPPER_VERSION@">4.3+T</token>
18 <token name="@SNPEFF_VERSION@">SnpEff4.3</token> 18 <token name="@SNPEFF_VERSION@">SnpEff4.3</token>
19 <token name="@SNPEFF_DATABASE_URL@">https://sourceforge.net/projects/snpeff/files/databases/v4_3/</token> 19 <token name="@SNPEFF_DATABASE_URL@">https://sourceforge.net/projects/snpeff/files/databases/v4_3/</token>
20 <token name="@JAVA_OPTIONS@">-Xmx\${GALAXY_MEMORY_MB:-8192}m</token> 20 <token name="@JAVA_OPTIONS@">-Xmx\${GALAXY_MEMORY_MB:-8192}m</token>
21 <xml name="ref_select">
22 <conditional name="reference_source">
23 <param name="reference_source_selector" type="select" label="Choose the source for the reference genome">
24 <option value="cached">Locally cached</option>
25 <option value="history">History</option>
26 </param>
27 <when value="cached">
28 <param name="ref_file" type="select" label="Select reference genome">
29 <options from_data_table="fasta_indexes"/>
30 </param>
31 </when>
32 <when value="history">
33 <param name="input_fasta" type="data" format="fasta,fasta.gz" label="Genome in FASTA format" help="This dataset is required for generating SnpEff database. See help section below."/>
34 </when>
35 </conditional>
36 </xml>
21 <token name="@EXTERNAL_DOCUMENTATION@"> 37 <token name="@EXTERNAL_DOCUMENTATION@">
22 38
23 39
24 ------- 40 -------
25 41