Mercurial > repos > iuc > snippy
view tool-data/all_fasta.loc.sample @ 8:eea223efd86e draft
"planemo upload commit 401528f2dba371d4ca2491aaa83e0b2bfe36f81a"
| author | iuc |
|---|---|
| date | Fri, 15 Nov 2019 13:18:31 +0000 |
| parents | cb239576dd0f |
| children |
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#This file lists the locations and dbkeys of all the fasta files #under the "genome" directory (a directory that contains a directory #for each build). The script extract_fasta.py will generate the file #all_fasta.loc. This file has the format (white space characters are #TAB characters): # #<unique_build_id> <dbkey> <display_name> <file_path> # #So, all_fasta.loc could look something like this: # #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa # #Your all_fasta.loc file should contain an entry for each individual #fasta file. So there will be multiple fasta files for each build, #such as with hg19 above. #
