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comparison snippy-core.xml @ 4:98413117ca70 draft

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planemo upload commit b5890b40c257a093ebf358294544aa69087da51e
author iuc
date Thu, 11 Jul 2019 09:40:23 -0400
parents 4eb9595bff60
children f9d3b5a6ef31
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3:a2147b3769dd 4:98413117ca70
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 #for $indir in $indirs 11 #for $indir in $indirs
12 #set $sample_name = os.path.splitext(os.path.basename(str($indir.name)))[0] 12 #set $sample_name = os.path.splitext(os.path.basename(str($indir.name)))[0]
13 mkdir '$sample_name' && tar -xf '$indir' -C '$sample_name' --strip-components=1 && 13 mkdir '$sample_name' && tar -xf '$indir' -C '$sample_name' --strip-components=1 &&
14 #end for 14 #end for
15 #set snippy_dirs = ' '.join([os.path.splitext(os.path.basename(str($indir.name)))[0] for $indir in $indirs]) 15 #set snippy_dirs = " ".join(["'{0}'".format(os.path.splitext(os.path.basename(str($indir.name)))[0]) for $indir in $indirs])
16 snippy-core 16 snippy-core
17 --ref '$ref' 17 --ref '$ref'
18 ${snippy_dirs} 18 ${snippy_dirs}
19 ]]></command> 19 ]]></command>
20 20