# HG changeset patch
# User iuc
# Date 1720177533 0
# Node ID 4a1c0fe5be8ffcd137d0a837558ec951804039f4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snapatac2 commit df9c285dddde7d901823c608c8d7dab971224b5b
diff -r 000000000000 -r 4a1c0fe5be8f macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Fri Jul 05 11:05:33 2024 +0000
@@ -0,0 +1,190 @@
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+ 2.5.3
+ 2
+ 23.0
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+ snapatac2
+ plotly
+ python-kaleido
+ polars
+ pyarrow
+ python-igraph
+ hdbscan
+ harmonypy
+ scanorama
+ macs3
+ multiprocess
+ leidenalg
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+ '$hidden_output' &&
+ python '$script_file' >> '$hidden_output' &&
+ touch 'anndata_info.txt' &&
+ cat 'anndata_info.txt' @CMD_prettify_stdout@
+ ]]>
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+ 10.1038/s41592-023-02139-9
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diff -r 000000000000 -r 4a1c0fe5be8f plotting.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/plotting.xml Fri Jul 05 11:05:33 2024 +0000
@@ -0,0 +1,233 @@
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+ macros.xml
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+ method['out_file'] == 'png'
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+ method['out_file'] == 'pdf'
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+ method['out_file'] == 'svg'
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+ advanced_common['show_log']
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+ `__
+
+Plot the UMAP embedding, using `pl.umap`
+========================================
+
+Plot the UMAP embedding.
+
+More details on the `SnapATAC2 documentation
+`__
+
+Plot the eigenvalues of spectral embedding, using `pl.spectral_eigenvalues`
+===========================================================================
+
+Plot the eigenvalues of spectral embedding.
+
+More details on the `SnapATAC2 documentation
+`__
+ ]]>
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+