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comparison macros.xml @ 7:3af174b9fb79 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/slamdunk commit b5aa6e762b55a9793dc7514efcda05eb2ccd529c"
author iuc
date Sat, 25 Sep 2021 18:21:07 +0000
parents f000245e823b
children
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6:f000245e823b 7:3af174b9fb79
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@TOOL_VERSION@">0.4.1</token> 3 <token name="@TOOL_VERSION@">0.4.3</token>
4 <token name="@VERSION_SUFFIX@">1</token>
4 <token name="@PROFILE@">20.05</token> 5 <token name="@PROFILE@">20.05</token>
5 <xml name="requirements"> 6 <xml name="requirements">
6 <requirements> 7 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">slamdunk</requirement> 8 <requirement type="package" version="@TOOL_VERSION@">slamdunk</requirement>
8 </requirements> 9 </requirements>
12 <param name="reference_source_selector" type="select" label="Reference genome FASTA file" help="Select a built-in FASTA file (if available) or one from the history"> 13 <param name="reference_source_selector" type="select" label="Reference genome FASTA file" help="Select a built-in FASTA file (if available) or one from the history">
13 <option value="cached">Use a built-in FASTA</option> 14 <option value="cached">Use a built-in FASTA</option>
14 <option value="history">Use a FASTA from history</option> 15 <option value="history">Use a FASTA from history</option>
15 </param> 16 </param>
16 <when value="cached"> 17 <when value="cached">
17 <param name="ref_file" type="select" label="Use built-in FASTA" help="Select genome from the list"> 18 <param name="ref_file" argument="--reference" type="select" label="Use built-in FASTA" help="Select genome from the list">
18 <options from_data_table="all_fasta"> 19 <options from_data_table="all_fasta">
19 <filter type="sort_by" column="2" /> 20 <filter type="sort_by" column="2" />
20 <validator type="no_options" message="No reference genomes are available" /> 21 <validator type="no_options" message="No reference genomes are available" />
21 </options> 22 </options>
22 <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/> 23 <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/>
23 </param> 24 </param>
24 </when> 25 </when>
25 <when value="history"> 26 <when value="history">
26 <param name="ref_file" type="data" format="fasta" label="Use the following dataset as the FASTA" help="You can upload a FASTA sequence to the history and use it as reference" /> 27 <param name="ref_file" argument="--reference" type="data" format="fasta" label="Use the following dataset as the FASTA" help="You can upload a FASTA sequence to the history and use it as reference" />
27 </when> 28 </when>
28 </conditional> 29 </conditional>
29 <param name="Reference" type="data" format="bed" label="Reference 3'UTRs BED file" /> 30 <param argument="--reference" type="data" format="bed" label="Reference 3'UTRs BED file" />
30 </xml> 31 </xml>
31 <xml name="citations"> 32 <xml name="citations">
32 <citation type="doi"> 33 <citation type="doi">
33 10.1186/s12859-019-2849-7 34 10.1186/s12859-019-2849-7
34 </citation> 35 </citation>