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comparison macros.xml @ 1:9dfecde9fa06 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/slamdunk commit dbd131d3a162e9d70c305148d305680acb549e93
author iuc
date Sun, 20 Jan 2019 06:50:55 -0500
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children 9f3baffd79b7
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0:a4de8b7d6f10 1:9dfecde9fa06
1 <?xml version="1.0"?>
2 <macros>
3 <token name="@TOOL_VERSION@">0.3.3</token>
4 <xml name="requirements">
5 <requirements>
6 <requirement type="package" version="@TOOL_VERSION@">slamdunk</requirement>
7 </requirements>
8 </xml>
9 <xml name="reference_files">
10 <conditional name="reference_source">
11 <param name="reference_source_selector" type="select" label="Reference genome FASTA file" help="Select a built-in FASTA file (if available) or one from the history">
12 <option value="cached">Use a built-in FASTA</option>
13 <option value="history">Use a FASTA from history</option>
14 </param>
15 <when value="cached">
16 <param name="ref_file" type="select" label="Use built-in FASTA" help="Select genome from the list">
17 <options from_data_table="all_fasta">
18 <filter type="sort_by" column="2" />
19 <validator type="no_options" message="No reference genomes are available" />
20 </options>
21 <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/>
22 </param>
23 </when>
24 <when value="history">
25 <param name="ref_file" type="data" format="fasta" label="Use the following dataset as the FASTA" help="You can upload a FASTA sequence to the history and use it as reference" />
26 </when>
27 </conditional>
28 <param name="Reference" type="data" format="bed" label="Reference 3'UTRs BED file" />
29 </xml>
30 <xml name="citations">
31 <citation type="bibtex">
32 @misc{Neumann2018,
33 author = {Neumann, Tobias},
34 year = {2018},
35 title = Slamdunk},
36 publisher = {GitHub},
37 journal = {GitHub repository},
38 url = {https://github.com/t-neumann/slamdunk},
39 }
40 </citation>
41 </xml>
42 </macros>