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comparison seqwish.xml @ 4:bf9be5d8070a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqwish/ commit be59475d6ba3ea230139ecf4fed45d7c0e372d24"
author iuc
date Mon, 13 Dec 2021 11:14:59 +0000
parents bac369957bb9
children 3f6524eb045f
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3:bac369957bb9 4:bf9be5d8070a
1 <tool id="seqwish" name="seqwish" version="@TOOL_VERSION@" > 1 <tool id="seqwish" name="seqwish" version="@TOOL_VERSION@" >
2 <description>Alignment to variation graph inducer</description> 2 <description>Alignment to variation graph inducer</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">0.7.2</token> 4 <token name="@TOOL_VERSION@">0.7.3</token>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">seqwish</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">seqwish</requirement>
8 </requirements> 8 </requirements>
9 <version_command>seqwish --version</version_command>
9 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
10 seqwish 11 seqwish
11 -p '$paf_alns' 12 -p '$paf_alns'
12 -s ${ ' '.join(["'%s'" % x for x in $seqs]) } 13 -s ${ ' '.join(["'%s'" % x for x in $seqs]) }
13 --gfa='$out_gfa' 14 --gfa='$out_gfa'