Mercurial > repos > iuc > sequali

comparison sequali.xml @ 1:845bd6c1c0c1 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sequali commit 483a13382456fea4f1934e35804e0dc6c86703c5
author iuc
date Tue, 27 May 2025 11:03:28 +0000
parents 51c7fadc13e4
children 03bb009d5042
comparison
equal deleted inserted replaced
0:51c7fadc13e4 1:845bd6c1c0c1
1 <tool id="sequali" name="sequali" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05"> 1 <tool id="sequali" name="sequali" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
2 <description>Fast sequencing data quality metrics for short and long reads</description> 2 <description>Fast sequencing data quality metrics for short and long reads</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">0.12.0</token> 4 <token name="@TOOL_VERSION@">1.0.1</token>
5 <token name="@VERSION_SUFFIX@">0</token> 5 <token name="@VERSION_SUFFIX@">0</token>
6 </macros> 6 </macros>
7 <xrefs> 7 <xrefs>
8 <xref type="bio.tools">sequali</xref> 8 <xref type="bio.tools">sequali</xref>
9 </xrefs> 9 </xrefs>
214 - Checks for 6 illumina adapter sequences and 17 nanopore adapter sequences for single read data. 214 - Checks for 6 illumina adapter sequences and 17 nanopore adapter sequences for single read data.
215 - Determines adapters by overlap analysis for paired read data. 215 - Determines adapters by overlap analysis for paired read data.
216 - Insert size metrics for paired read data. 216 - Insert size metrics for paired read data.
217 - Per tile quality plots for illumina reads. 217 - Per tile quality plots for illumina reads.
218 - Channel and other plots for nanopore reads. 218 - Channel and other plots for nanopore reads.
219 - Reproducible reports without timestamps.
219 220
220 ----- 221 -----
221 222
222 **Supported formats** 223 **Supported formats**
223 224
225 - Paired end sequencing data is supported. 226 - Paired end sequencing data is supported.
226 - For sequences called by illumina base callers an additional plot with the per tile quality will be provided. 227 - For sequences called by illumina base callers an additional plot with the per tile quality will be provided.
227 - For sequences called by guppy additional plots for nanopore specific data will be provided. 228 - For sequences called by guppy additional plots for nanopore specific data will be provided.
228 - (unaligned) BAM with single reads. Read-pair information is currently ignored. 229 - (unaligned) BAM with single reads. Read-pair information is currently ignored.
229 - For BAM data as delivered by dorado additional nanopore plots will be provided. 230 - For BAM data as delivered by dorado additional nanopore plots will be provided.
231 - For aligned BAM files, secondary and supplementary reads are ignored similar to how samtools fastq handles the data.
230 232
231 ----- 233 -----
232 234
233 **Outputs** 235 **Outputs**
234 236