Mercurial > repos > iuc > seqtk
view test.xml @ 9:f9305f8811b8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 3c29d3c8710ca23b4c59c2cf8501697331a65ac0
| author | iuc |
|---|---|
| date | Thu, 15 Oct 2015 13:05:45 -0400 |
| parents | |
| children |
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<?xml version="1.0" encoding="UTF-8"?><testsuite name="nosetests" tests="2" errors="0" failures="1" skip="0"><testcase classname="functional.test_toolbox.TestForTool_seqtk_comp" name="test_tool_000000" time="13.313"></testcase><testcase classname="functional.test_toolbox.TestForTool_seqtk_comp" name="test_tool_000001" time="12.937"><failure type="functional.test_toolbox.JobOutputsError" message="History item different than expected, difference (using diff): ( /home/hxr/work/tools-iuc/tools/seqtk/test-data/seqtk_cutn.out v. /tmp/tmpCMllB5/tmp/tmpJSB4jxseqtk_cutn.out ) --- local_file +++ history_data @@ -1,4 +1,2 @@ ->test:1-17 -AACTGATCGATCGATCG ->test:29-33 -ACATG +#chr	length	#A	#C	#G	#T	#2	#3	#4	#CpG	#tv	#ts	#CpG-ts +test	33	7	5	5	5	0	0	11	6	0	0	0 -------------------- >> begin captured logging << -------------------- requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost galaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key requests.packages.urllib3.connectionpool: DEBUG: "GET /api/users?key=test_key HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost galaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key requests.packages.urllib3.connectionpool: DEBUG: "POST /api/users/2891970512fa2d5a/api_key HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost requests.packages.urllib3.connectionpool: DEBUG: "POST /api/histories HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost galaxy.tools.actions.upload_common: INFO: tool upload1 created job id 3 galaxy.tools.execute: DEBUG: Tool [upload1] created job [3] (698.515 ms) requests.packages.urllib3.connectionpool: DEBUG: "POST /api/tools HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost galaxy.jobs: DEBUG: (3) Working directory for job is: /tmp/tmpCMllB5/job_working_directory/000/3 galaxy.jobs.handler: DEBUG: (3) Dispatching to local runner requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost galaxy.jobs: DEBUG: (3) Persisting job destination (destination id: local) galaxy.jobs.runners: DEBUG: Job [3] queued (1343.475 ms) galaxy.jobs.handler: INFO: (3) Job dispatched galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools' galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring galaxy.jobs.runners: DEBUG: (3) command is: python /home/hxr/work/galaxy/tools/data_source/upload.py /home/hxr/work/galaxy /tmp/tmpCMllB5/tmp/tmpIw2yGA /tmp/tmpCMllB5/tmp/tmp6bjnD8 3:/tmp/tmpCMllB5/job_working_directory/000/3/dataset_3_files:/tmp/tmpCMllB5/files/000/dataset_3.dat; return_code=$?; python "/tmp/tmpCMllB5/job_working_directory/000/3/set_metadata_l3EI2j.py" "/tmp/tmpCMllB5/tmp/tmpIw2yGA" "/tmp/tmpCMllB5/job_working_directory/000/3/galaxy.json" "/tmp/tmpCMllB5/job_working_directory/000/3/metadata_in_HistoryDatasetAssociation_3_dPLYGW,/tmp/tmpCMllB5/job_working_directory/000/3/metadata_kwds_HistoryDatasetAssociation_3_cdS4Q9,/tmp/tmpCMllB5/job_working_directory/000/3/metadata_out_HistoryDatasetAssociation_3_PriNuI,/tmp/tmpCMllB5/job_working_directory/000/3/metadata_results_HistoryDatasetAssociation_3_2hfSyu,/tmp/tmpCMllB5/files/000/dataset_3.dat,/tmp/tmpCMllB5/job_working_directory/000/3/metadata_override_HistoryDatasetAssociation_3_7pu_Wo" 5242880; sh -c "exit $return_code" galaxy.jobs.runners.local: DEBUG: (3) executing job script: /tmp/tmpCMllB5/job_working_directory/000/3/galaxy_3.sh galaxy.jobs: DEBUG: (3) Persisting job destination (destination id: local) requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost galaxy.jobs.runners.local: DEBUG: execution finished: /tmp/tmpCMllB5/job_working_directory/000/3/galaxy_3.sh requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost galaxy.datatypes.metadata: DEBUG: loading metadata from file for: HistoryDatasetAssociation 3 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost galaxy.jobs: DEBUG: job 3 ended (finish() executed in (1640.542 ms)) requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost galaxy.tools.actions: INFO: Handled output (441.631 ms) galaxy.tools.actions: INFO: Verified access to datasets (9.077 ms) galaxy.tools.execute: DEBUG: Tool [seqtk_comp] created job [4] (957.828 ms) requests.packages.urllib3.connectionpool: DEBUG: "POST /api/tools HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost galaxy.jobs: DEBUG: (4) Working directory for job is: /tmp/tmpCMllB5/job_working_directory/000/4 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/jobs/8155e4b4bf1581ff?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None galaxy.jobs.handler: DEBUG: (4) Dispatching to local runner galaxy.jobs: DEBUG: (4) Persisting job destination (destination id: local) requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost galaxy.jobs.runners: DEBUG: Job [4] queued (268.598 ms) galaxy.jobs.handler: INFO: (4) Job dispatched galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'seqtk' galaxy.tools.deps: WARNING: Failed to resolve dependency on 'seqtk', ignoring galaxy.jobs.runners: DEBUG: (4) command is: seqtk comp /tmp/tmpCMllB5/files/000/dataset_3.dat | awk 'BEGIN{print "#chr\tlength\t#A\t#C\t#G\t#T\t#2\t#3\t#4\t#CpG\t#tv\t#ts\t#CpG-ts"}1' > /tmp/tmpCMllB5/files/000/dataset_4.dat; return_code=$?; python "/tmp/tmpCMllB5/job_working_directory/000/4/set_metadata_OS_L8J.py" "/tmp/tmpCMllB5/tmp/tmpIw2yGA" "/tmp/tmpCMllB5/job_working_directory/000/4/galaxy.json" "/tmp/tmpCMllB5/job_working_directory/000/4/metadata_in_HistoryDatasetAssociation_4_IpnblQ,/tmp/tmpCMllB5/job_working_directory/000/4/metadata_kwds_HistoryDatasetAssociation_4_3bnNZN,/tmp/tmpCMllB5/job_working_directory/000/4/metadata_out_HistoryDatasetAssociation_4_sBHfWI,/tmp/tmpCMllB5/job_working_directory/000/4/metadata_results_HistoryDatasetAssociation_4_yuQ2fB,/tmp/tmpCMllB5/files/000/dataset_4.dat,/tmp/tmpCMllB5/job_working_directory/000/4/metadata_override_HistoryDatasetAssociation_4_ZCVTqC" 5242880; sh -c "exit $return_code" galaxy.jobs.runners.local: DEBUG: (4) executing job script: /tmp/tmpCMllB5/job_working_directory/000/4/galaxy_4.sh galaxy.jobs: DEBUG: (4) Persisting job destination (destination id: local) requests.packages.urllib3.connectionpool: DEBUG: "GET /api/jobs/8155e4b4bf1581ff?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None galaxy.jobs.runners.local: DEBUG: execution finished: /tmp/tmpCMllB5/job_working_directory/000/4/galaxy_4.sh galaxy.datatypes.metadata: DEBUG: loading metadata from file for: HistoryDatasetAssociation 4 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost galaxy.jobs: DEBUG: job 4 ended (finish() executed in (638.998 ms)) requests.packages.urllib3.connectionpool: DEBUG: "GET /api/jobs/8155e4b4bf1581ff?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost requests.packages.urllib3.connectionpool: DEBUG: "GET /api/jobs/8155e4b4bf1581ff?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost requests.packages.urllib3.connectionpool: DEBUG: "GET /api/jobs/8155e4b4bf1581ff?full=true&key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost requests.packages.urllib3.connectionpool: DEBUG: "GET /api/jobs/8155e4b4bf1581ff?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525/contents/8155e4b4bf1581ff/display?raw=true&key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None base.twilltestcase: DEBUG: keepoutdir: /tmp/tmpCMllB5/jobfiles, ofn: /tmp/tmpCMllB5/jobfiles/seqtk_cutn.out base.twilltestcase: DEBUG: ## GALAXY_TEST_SAVE=/tmp/tmpCMllB5/jobfiles. saved /tmp/tmpCMllB5/jobfiles/seqtk_cutn.out base.twilltestcase: INFO: ## files diff on /home/hxr/work/tools-iuc/tools/seqtk/test-data/seqtk_cutn.out and /tmp/tmpCMllB5/tmp/tmpJSB4jxseqtk_cutn.out lines_diff=0, found diff = 6 --------------------- >> end captured logging << ---------------------"><![CDATA[ File "/usr/lib/python2.7/unittest/case.py", line 329, in run testMethod() File "/home/hxr/work/galaxy/test/functional/test_toolbox.py", line 289, in test_tool self.do_it( td ) File "/home/hxr/work/galaxy/test/functional/test_toolbox.py", line 73, in do_it raise e 'History item different than expected, difference (using diff):\n( /home/hxr/work/tools-iuc/tools/seqtk/test-data/seqtk_cutn.out v. /tmp/tmpCMllB5/tmp/tmpJSB4jxseqtk_cutn.out )\n--- local_file\n+++ history_data\n@@ -1,4 +1,2 @@\n->test:1-17\n-AACTGATCGATCGATCG\n->test:29-33\n-ACATG\n+#chr\tlength\t#A\t#C\t#G\t#T\t#2\t#3\t#4\t#CpG\t#tv\t#ts\t#CpG-ts\n+test\t33\t7\t5\t5\t5\t0\t0\t11\t6\t0\t0\t0\n\n-------------------- >> begin captured logging << --------------------\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/users?key=test_key HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nrequests.packages.urllib3.connectionpool: DEBUG: "POST /api/users/2891970512fa2d5a/api_key HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nrequests.packages.urllib3.connectionpool: DEBUG: "POST /api/histories HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.tools.actions.upload_common: INFO: tool upload1 created job id 3\ngalaxy.tools.execute: DEBUG: Tool [upload1] created job [3] (698.515 ms)\nrequests.packages.urllib3.connectionpool: DEBUG: "POST /api/tools HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.jobs: DEBUG: (3) Working directory for job is: /tmp/tmpCMllB5/job_working_directory/000/3\ngalaxy.jobs.handler: DEBUG: (3) Dispatching to local runner\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.jobs: DEBUG: (3) Persisting job destination (destination id: local)\ngalaxy.jobs.runners: DEBUG: Job [3] queued (1343.475 ms)\ngalaxy.jobs.handler: INFO: (3) Job dispatched\ngalaxy.tools.deps: DEBUG: Building dependency shell command for dependency \'samtools\'\ngalaxy.tools.deps: WARNING: Failed to resolve dependency on \'samtools\', ignoring\ngalaxy.jobs.runners: DEBUG: (3) command is: python /home/hxr/work/galaxy/tools/data_source/upload.py /home/hxr/work/galaxy /tmp/tmpCMllB5/tmp/tmpIw2yGA /tmp/tmpCMllB5/tmp/tmp6bjnD8 3:/tmp/tmpCMllB5/job_working_directory/000/3/dataset_3_files:/tmp/tmpCMllB5/files/000/dataset_3.dat; return_code=$?; python "/tmp/tmpCMllB5/job_working_directory/000/3/set_metadata_l3EI2j.py" "/tmp/tmpCMllB5/tmp/tmpIw2yGA" "/tmp/tmpCMllB5/job_working_directory/000/3/galaxy.json" "/tmp/tmpCMllB5/job_working_directory/000/3/metadata_in_HistoryDatasetAssociation_3_dPLYGW,/tmp/tmpCMllB5/job_working_directory/000/3/metadata_kwds_HistoryDatasetAssociation_3_cdS4Q9,/tmp/tmpCMllB5/job_working_directory/000/3/metadata_out_HistoryDatasetAssociation_3_PriNuI,/tmp/tmpCMllB5/job_working_directory/000/3/metadata_results_HistoryDatasetAssociation_3_2hfSyu,/tmp/tmpCMllB5/files/000/dataset_3.dat,/tmp/tmpCMllB5/job_working_directory/000/3/metadata_override_HistoryDatasetAssociation_3_7pu_Wo" 5242880; sh -c "exit $return_code"\ngalaxy.jobs.runners.local: DEBUG: (3) executing job script: /tmp/tmpCMllB5/job_working_directory/000/3/galaxy_3.sh\ngalaxy.jobs: DEBUG: (3) Persisting job destination (destination id: local)\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.jobs.runners.local: DEBUG: execution finished: /tmp/tmpCMllB5/job_working_directory/000/3/galaxy_3.sh\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.datatypes.metadata: DEBUG: loading metadata from file for: HistoryDatasetAssociation 3\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.jobs: DEBUG: job 3 ended (finish() executed in (1640.542 ms))\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.tools.actions: INFO: Handled output (441.631 ms)\ngalaxy.tools.actions: INFO: Verified access to datasets (9.077 ms)\ngalaxy.tools.execute: DEBUG: Tool [seqtk_comp] created job [4] (957.828 ms)\nrequests.packages.urllib3.connectionpool: DEBUG: "POST /api/tools HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.jobs: DEBUG: (4) Working directory for job is: /tmp/tmpCMllB5/job_working_directory/000/4\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/jobs/8155e4b4bf1581ff?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\ngalaxy.jobs.handler: DEBUG: (4) Dispatching to local runner\ngalaxy.jobs: DEBUG: (4) Persisting job destination (destination id: local)\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.jobs.runners: DEBUG: Job [4] queued (268.598 ms)\ngalaxy.jobs.handler: INFO: (4) Job dispatched\ngalaxy.tools.deps: DEBUG: Building dependency shell command for dependency \'seqtk\'\ngalaxy.tools.deps: WARNING: Failed to resolve dependency on \'seqtk\', ignoring\ngalaxy.jobs.runners: DEBUG: (4) command is: seqtk comp /tmp/tmpCMllB5/files/000/dataset_3.dat | awk \'BEGIN{print "#chr\\tlength\\t#A\\t#C\\t#G\\t#T\\t#2\\t#3\\t#4\\t#CpG\\t#tv\\t#ts\\t#CpG-ts"}1\' > /tmp/tmpCMllB5/files/000/dataset_4.dat; return_code=$?; python "/tmp/tmpCMllB5/job_working_directory/000/4/set_metadata_OS_L8J.py" "/tmp/tmpCMllB5/tmp/tmpIw2yGA" "/tmp/tmpCMllB5/job_working_directory/000/4/galaxy.json" "/tmp/tmpCMllB5/job_working_directory/000/4/metadata_in_HistoryDatasetAssociation_4_IpnblQ,/tmp/tmpCMllB5/job_working_directory/000/4/metadata_kwds_HistoryDatasetAssociation_4_3bnNZN,/tmp/tmpCMllB5/job_working_directory/000/4/metadata_out_HistoryDatasetAssociation_4_sBHfWI,/tmp/tmpCMllB5/job_working_directory/000/4/metadata_results_HistoryDatasetAssociation_4_yuQ2fB,/tmp/tmpCMllB5/files/000/dataset_4.dat,/tmp/tmpCMllB5/job_working_directory/000/4/metadata_override_HistoryDatasetAssociation_4_ZCVTqC" 5242880; sh -c "exit $return_code"\ngalaxy.jobs.runners.local: DEBUG: (4) executing job script: /tmp/tmpCMllB5/job_working_directory/000/4/galaxy_4.sh\ngalaxy.jobs: DEBUG: (4) Persisting job destination (destination id: local)\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/jobs/8155e4b4bf1581ff?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\ngalaxy.jobs.runners.local: DEBUG: execution finished: /tmp/tmpCMllB5/job_working_directory/000/4/galaxy_4.sh\ngalaxy.datatypes.metadata: DEBUG: loading metadata from file for: HistoryDatasetAssociation 4\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.jobs: DEBUG: job 4 ended (finish() executed in (638.998 ms))\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/jobs/8155e4b4bf1581ff?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/jobs/8155e4b4bf1581ff?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/jobs/8155e4b4bf1581ff?full=true&key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/jobs/8155e4b4bf1581ff?key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\nrequests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nrequests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/5729865256bc2525/contents/8155e4b4bf1581ff/display?raw=true&key=f638cb8a63abd80cd458910c0e8128d6 HTTP/1.1" 200 None\nbase.twilltestcase: DEBUG: keepoutdir: /tmp/tmpCMllB5/jobfiles, ofn: /tmp/tmpCMllB5/jobfiles/seqtk_cutn.out\nbase.twilltestcase: DEBUG: ## GALAXY_TEST_SAVE=/tmp/tmpCMllB5/jobfiles. saved /tmp/tmpCMllB5/jobfiles/seqtk_cutn.out\nbase.twilltestcase: INFO: ## files diff on /home/hxr/work/tools-iuc/tools/seqtk/test-data/seqtk_cutn.out and /tmp/tmpCMllB5/tmp/tmpJSB4jxseqtk_cutn.out lines_diff=0, found diff = 6\n--------------------- >> end captured logging << ---------------------']]></failure><system-err><![CDATA[---------------------- >> begin tool stdout << ----------------------- ----------------------- >> end tool stdout << ------------------------ ---------------------- >> begin tool stderr << ----------------------- ----------------------- >> end tool stderr << ------------------------ ]]></system-err></testcase></testsuite>