Mercurial > repos > iuc > seqtk
diff seqtk_trimfq.xml @ 16:48a51c72f5e7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
| author | iuc |
|---|---|
| date | Wed, 17 Oct 2018 05:58:58 -0400 |
| parents | 16f2535c08bf |
| children | 069c8f0695ee |
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--- a/seqtk_trimfq.xml Mon Jun 05 13:26:30 2017 -0400 +++ b/seqtk_trimfq.xml Wed Oct 17 05:58:58 2018 -0400 @@ -16,7 +16,7 @@ -e $mode.e #end if '$in_file' -> '$default' +@CONDITIONAL_GZIP_OUT@ ]]></command> <inputs> <expand macro="in_faq"/> @@ -40,18 +40,25 @@ </outputs> <tests> <test> - <param name="in_file" value="seqtk_trimfq.fq"/> + <param name="in_file" value="seqtk_trimfq.fq" ftype="fastqsanger"/> <param name="mode_select" value="quality"/> <param name="q" value="0.05"/> <param name="l" value="30"/> - <output name="default" file="seqtk_trimfq_default.fq" ftype="fastq"/> + <output name="default" file="seqtk_trimfq_default.fq" ftype="fastqsanger"/> </test> <test> - <param name="in_file" value="seqtk_trimfq.fq"/> + <param name="in_file" value="seqtk_trimfq.fq" ftype="fastqsanger"/> <param name="mode_select" value="position"/> <param name="b" value="5"/> <param name="e" value="5"/> - <output name="default" file="seqtk_trimfq_be.fq" ftype="fastq"/> + <output name="default" file="seqtk_trimfq_be.fq" ftype="fastqsanger"/> + </test> + <test> + <param name="in_file" value="seqtk_trimfq.fq.gz" ftype="fastqsanger.gz"/> + <param name="mode_select" value="position"/> + <param name="b" value="5"/> + <param name="e" value="5"/> + <output name="default" file="seqtk_trimfq_be.fq.gz" ftype="fastqsanger.gz"/> </test> </tests> <help><![CDATA[