Mercurial > repos > iuc > seqtk
diff seqtk_randbase.xml @ 6:113f3c3d6bee draft
Uploaded
| author | iuc |
|---|---|
| date | Wed, 29 Apr 2015 22:47:00 -0400 |
| parents | 33ded39275c3 |
| children | 55e75a28fde7 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/seqtk_randbase.xml Wed Apr 29 22:47:00 2015 -0400 @@ -0,0 +1,45 @@ +<?xml version="1.0"?> +<tool id="seqtk_randbase" name="seqtk_randbase" version="@WRAPPER_VERSION@.0"> + <description>choose a random base from hets</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <expand macro="stdio"/> + <command><![CDATA[seqtk randbase + $in_file +> $default]]></command> + <inputs> + <expand macro="in_faq"/> + </inputs> + <outputs> + <data format_source="in_file" hidden="false" name="default" label="Unambiguous $in_file.name"/> + </outputs> + <tests> + <test> + <param name="in_file" value="seqtk_randbase.fa"/> + <output name="default" file="seqtk_randbase.out" ftype="fasta"/> + </test> + </tests> + <help><![CDATA[ +**What it does** + +Randomly resolves ambiguous bases + +:: + + # Input fasta + >ambig + ACGTMRWSYK + +results in + +:: + + # Output result + >ambig + ACGTCGTGTT + +@ATTRIBUTION@ +]]></help> +</tool>
